View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_146 (Length: 238)
Name: NF6131_low_146
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_146 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43853163 - 43853385
Alignment:
| Q |
1 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggggcaggaagcatttggagaaaagcttggactctggatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43853163 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggggcaggaagcatttggagaaaagcttggactctggatt |
43853262 |
T |
|
| Q |
101 |
gtcgtgccacaacagttgatatgtgaagttggtgtggacattgtttacatggtcaccgggggaaagtcactgcagaaaattcatgatttggtgtgtnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43853263 |
gtcgtgccacaacagttgatatgtgaagttggtgtggacattgtttacatggtcaccgggggaaagtcactgcagaaaattcatgatttggtgtgtaaaa |
43853362 |
T |
|
| Q |
201 |
nnnnttgcaaatcaatgaaaact |
223 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43853363 |
aaaattgcaaatcaatgaaaact |
43853385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 3434 - 3276
Alignment:
| Q |
1 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggggcaggaagcatttggagaaaagcttggactctggatt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||| || | || ||||| |||||| | || || | ||| |
|
|
| T |
3434 |
gcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatatt |
3335 |
T |
|
| Q |
101 |
gtcgtgccacaacagttgatatgtgaagttggtgtggacattgtttacatggtcaccgg |
159 |
Q |
| |
|
|| ||||| ||||| | || |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
3334 |
gtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccgg |
3276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 38827451 - 38827337
Alignment:
| Q |
1 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggggcaggaagcatttggagaaaagcttggactctggatt |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| | || |||||||| ||||||||||| || ||||| |||||||| || || || ||||||||| |
|
|
| T |
38827451 |
gcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaagaagcctttggagagaaactgggtctctggatt |
38827352 |
T |
|
| Q |
101 |
gtcgtgccacaacag |
115 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
38827351 |
gtggttccacaacag |
38827337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7979479 - 7979423
Alignment:
| Q |
1 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga |
57 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
7979479 |
gcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatga |
7979423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8031898 - 8031954
Alignment:
| Q |
1 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga |
57 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||||| |||||||| |||||||| |
|
|
| T |
8031898 |
gcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatga |
8031954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7971911 - 7971873
Alignment:
| Q |
1 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacg |
39 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
7971911 |
gcaaatggttgagatgcatgagatggttccaggaaaacg |
7971873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8041777 - 8041815
Alignment:
| Q |
1 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacg |
39 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
8041777 |
gcaaatggttgagatgcatgagatggttccaggaaaacg |
8041815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34409229 - 34409286
Alignment:
| Q |
1 |
gcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag |
58 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
34409229 |
gcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag |
34409286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University