View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_15 (Length: 557)
Name: NF6131_low_15
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 48234805 - 48234258
Alignment:
| Q |
1 |
cactttttaacagtactacccttaactgtaattgcagaatggacacgtgaatcttccctgcaaataccctagggatatatcttatcaccttctgatgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48234805 |
cactttttaacagtactacccttaactgtaattgcagaatggacacatgaatcttccctgcaaataccctagggatatatcttatcaccttctgatgaca |
48234706 |
T |
|
| Q |
101 |
aggaactttttccaacttggctatgacttgaattaattctctttgccctgcctcccatttctggtggaccttctattgtctcacacaaagttgataccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48234705 |
aggaactttttccaacttggctatgacttgaattaattctctttgccctgcctcccatttctggtggaccttctattgtctcacacaaagttgataccca |
48234606 |
T |
|
| Q |
201 |
tgtgctgtaccttccaatttcacttgatttcccctcaacaaaacacttgttaagtcctttctcatcagtccttttccgttaaaaaatgccggtaccaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48234605 |
tgtgctgtaccttccaatttcacttgatttcccctcaacaaaacacttgttaagtcctttctcatcagtccttttccgttaaaaaatgccggtaccaatg |
48234506 |
T |
|
| Q |
301 |
taaacttaaaacttcctcagcaaaattatgaggtgaatttattgtcttctttagcttgaaggaatccaatggatgccggctagggtgaatttccttgagc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48234505 |
taaacttaaaacttcctcagcaaaattatgaggtgaatttattgtcttctttagcttgaaggaatccaatggatgtcggctagggtgaatttccttgagc |
48234406 |
T |
|
| Q |
401 |
actttaattgaggagttattatatctcttcaagtcaataaatcgttttgcatgaagaaatgtttcaacatcaatgcgtaacttgtcaactattgaacgtg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
48234405 |
tctttaattgaggagttattatatctcttcaagtcaataaatcgttttgcatgaagaaatgtttcaatatcaatgcgtaacttgtcaactattgaatgtg |
48234306 |
T |
|
| Q |
501 |
tctctaggaaagcactatcaatatcatcttgaactagctttgtctgtg |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48234305 |
tctctaggaaagcactatcaatatcatcttgaactagctttgtctgtg |
48234258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 206 - 540
Target Start/End: Complemental strand, 48232373 - 48232046
Alignment:
| Q |
206 |
tgtaccttccaatttcacttgatttcccctcaacaaaacacttgttaagtcctttctcatcagtccttttccgttaaaaaatgccggtaccaatgtaaac |
305 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| ||| || |||||||||| || | |
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| T |
48232373 |
tgtaccttccaatttcacttgatttcccctcaacaaagcacttgttaagtctgttctccgcagtccttttctgttcaaacttgttggtaccaatggaagc |
48232274 |
T |
|
| Q |
306 |
ttaaaacttcctcagcaaaattatgaggtgaatttattgtcttctttagcttgaaggaatccaatggatgccggctagggtgaatttccttgagcacttt |
405 |
Q |
| |
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|| |||| |||||||||||||||||||||||||||| |||||| | ||||||||||||| | | ||| ||||||||||||||||| |||| |
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| T |
48232273 |
tt-------cctcggcaaaattatgaggtgaatttattgtctcctttagttgaaaggaatccaatgaaggtaggcaagggtgaatttccttgacttcttt |
48232181 |
T |
|
| Q |
406 |
aattgaggagttattatatctcttcaagtcaataaatcgttttgcatgaagaaatgtttcaacatcaatgcgtaacttgtcaactattgaacgtgtctct |
505 |
Q |
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||| |||| | |||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
48232180 |
aatggaggggaaattatatctcttcaagtcaatagatctttttgtatgaagaaatgtttcaatatcaacatgtaacttgtcaactattgaatgtgtctct |
48232081 |
T |
|
| Q |
506 |
aggaaagcactatcaatatcatcttgaactagctt |
540 |
Q |
| |
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|||| | |||| ||||| |||||||||||||||| |
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| T |
48232080 |
aggagatcactgccaataccatcttgaactagctt |
48232046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 48232608 - 48232492
Alignment:
| Q |
1 |
cactttttaacagtactacccttaactgtaattgcagaatggacacgtgaatcttccctgcaaataccctagggatatatcttatcaccttctgatgaca |
100 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||||| || ||||||| |||||||||||||||||||| |
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| T |
48232608 |
cactgtttaacaggactacccttaactgtaactgaagaatggacacatgcatcttccctgcaaatactctcaggatataccttatcaccttctgatgaca |
48232509 |
T |
|
| Q |
101 |
aggaactttttccaact |
117 |
Q |
| |
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| ||||| ||||||||| |
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| T |
48232508 |
aagaactgtttccaact |
48232492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 495
Target Start/End: Original strand, 10561692 - 10561744
Alignment:
| Q |
443 |
cgttttgcatgaagaaatgtttcaacatcaatgcgtaacttgtcaactattga |
495 |
Q |
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||||||||||||||||||||||| | ||||| | |||||||||||| ||||| |
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| T |
10561692 |
cgttttgcatgaagaaatgtttctatatcaaaacctaacttgtcaacaattga |
10561744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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