View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_153 (Length: 235)
Name: NF6131_low_153
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_153 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5697993 - 5698215
Alignment:
| Q |
1 |
ccaccgtacaggggatactctacacttaggagtaacggcaatgctatattgattagattaggcatatttggtatgaaaatcttcatccaaaatatatccc |
100 |
Q |
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| T |
5697993 |
ccaccgtacaggggatactctatacttaggagtaacggcaatgctatattgattagattaggcatatttggtatgaaaatcttcatccaaaatatatccc |
5698092 |
T |
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| Q |
101 |
agaatttggattcataagtgttaggaggtgacttatgacactggttcgaaaacaatacctctaattaaatgttccaacacgataaactgaaaaagatcaa |
200 |
Q |
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| T |
5698093 |
agaatttggattcataagtgttaggaggtgacttatgacactggttcgaaaacaatacctctaattaaatgttccaacacgataaactgaaaaagatcaa |
5698192 |
T |
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| Q |
201 |
aacttacctctaaacaagaatat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5698193 |
aacttacctctaaacaagaatat |
5698215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 5686244 - 5686324
Alignment:
| Q |
17 |
actctacacttaggagtaacggcaatgctatattgattagattaggcatatttgg-tatgaaaatcttcatccaaaatata |
96 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
5686244 |
actctacacttgggagtaacggcaatgctatattgattagattaggcatatttggatatgaaaatctccatccaaaatata |
5686324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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