View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_156 (Length: 231)

Name: NF6131_low_156

Description: NF6131

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6131_low_156

[»] chr4 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 178; E-Value: 4e-96

Query Start/End: Original strand, 16 - 197

Target Start/End: Complemental strand, 33128857 - 33128676

Alignment:

Q	16	caaagggtccaactatataaacccagaatcccttgtagatgtgcatcactacagcaggcccaaaagttctggctgggttcattgatgcacctgacacagg	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33128857	caaagggtccaactatataaacccagaatcccttgtagatgtgcatcactacagcaggcccaaaagttctggctgggttcattgatgcacctgacacagg	33128758	T

Q	116	actgcatgcaattatcaaacttaggattaaattgaagtagtatatatggacttcattatgataagtaaaaccattgaaactt	197	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33128757	actgcgtgcaattatcaaacttaggattaaattgaagtagtatatatggacttcattatgataagtaaaaccattgaaactt	33128676	T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 24 - 115

Target Start/End: Original strand, 1703671 - 1703762

Alignment:

Q	24	ccaactatataaacccagaatcccttgtagatgtgcatcactacagcaggcccaaaagttctggctgggttcattgatgcacctgacacagg	115	Q
		\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\| \| \|\|\|\|\| \|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1703671	ccaactatatatatccacaatcctttgtaaatatgtatcacaattgcaggaccaatacttcttgctgggttcatagatgcacctgacacagg	1703762	T

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