View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_157 (Length: 229)
Name: NF6131_low_157
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_157 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 11953866 - 11953781
Alignment:
| Q |
17 |
caagcacaacctcgaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtcatacatgacactctagacttg |
102 |
Q |
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| T |
11953866 |
caagcacaacctcaaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtcatacatgacactctagacttg |
11953781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 11953736 - 11953670
Alignment:
| Q |
147 |
atctatttaagacttcttagtggatagagcctccaccaaactaaaacctccagaatttactgctgcc |
213 |
Q |
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| T |
11953736 |
atctatttaagacttcttagtggatagagcctccaccaaactaaaacctccagaatttactgctgcc |
11953670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 11980041 - 11979990
Alignment:
| Q |
31 |
aatagatcttcagggaacttttcccaaatttctggtttcataacttcagtca |
82 |
Q |
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| T |
11980041 |
aatagatcttcaggaaatttttcccaaatttgtggtttcataacttcagtca |
11979990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 34751464 - 34751416
Alignment:
| Q |
31 |
aatagatcttcagggaacttttcccaaatttctggtttcataacttcag |
79 |
Q |
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| T |
34751464 |
aatagatcttcaggaaatttttcccaaatttggggtttcataatttcag |
34751416 |
T |
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