View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_16 (Length: 549)

Name: NF6131_low_16
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_16
NF6131_low_16
[»] chr2 (21 HSPs)
chr2 (18-541)||(34176264-34176786)
chr2 (18-287)||(34144143-34144412)
chr2 (18-161)||(34115049-34115192)
chr2 (463-542)||(9050117-9050196)
chr2 (349-456)||(2248953-2249061)
chr2 (463-534)||(16576252-16576323)
chr2 (463-527)||(35370402-35370466)
chr2 (365-452)||(16576215-16576302)
chr2 (386-457)||(16863445-16863515)
chr2 (463-541)||(16863460-16863538)
chr2 (385-452)||(38576958-38577025)
chr2 (463-541)||(13712743-13712821)
chr2 (349-444)||(13712948-13713045)
chr2 (409-457)||(13712766-13712814)
chr2 (469-541)||(38576930-38577002)
chr2 (494-541)||(1027407-1027454)
chr2 (466-541)||(13712912-13712987)
chr2 (246-287)||(34115268-34115309)
chr2 (463-527)||(16576421-16576485)
chr2 (464-539)||(34176882-34176955)
chr2 (465-541)||(35371117-35371193)
[»] chr7 (10 HSPs)
chr7 (324-450)||(43208671-43208798)
chr7 (463-541)||(23944080-23944158)
chr7 (325-426)||(32988565-32988667)
chr7 (463-540)||(32138880-32138957)
chr7 (479-534)||(34891385-34891440)
chr7 (463-534)||(34891537-34891608)
chr7 (365-442)||(27651540-27651616)
chr7 (408-452)||(7463858-7463902)
chr7 (463-511)||(29152350-29152398)
chr7 (408-452)||(32138907-32138951)
[»] chr5 (15 HSPs)
chr5 (463-540)||(2243310-2243387)
chr5 (385-538)||(972816-972963)
chr5 (463-540)||(14138549-14138626)
chr5 (473-534)||(39808232-39808293)
chr5 (469-541)||(7982373-7982445)
chr5 (459-539)||(22780339-22780419)
chr5 (463-542)||(973115-973194)
chr5 (405-444)||(14138552-14138591)
chr5 (401-452)||(41264532-41264583)
chr5 (466-525)||(41264536-41264595)
chr5 (477-527)||(39730313-39730363)
chr5 (405-450)||(2243339-2243384)
chr5 (500-541)||(17739907-17739948)
chr5 (384-456)||(17736916-17736987)
chr5 (494-542)||(40483716-40483764)
[»] chr1 (13 HSPs)
chr1 (463-540)||(68101-68178)
chr1 (463-540)||(52432665-52432742)
chr1 (463-540)||(10775167-10775244)
chr1 (463-519)||(46080975-46081031)
chr1 (465-537)||(3231964-3232036)
chr1 (408-452)||(10775173-10775217)
chr1 (385-452)||(2534437-2534504)
chr1 (405-444)||(24873772-24873811)
chr1 (405-444)||(24874605-24874644)
chr1 (475-541)||(2534409-2534475)
chr1 (391-452)||(52432654-52432715)
chr1 (386-450)||(3231946-3232010)
chr1 (385-456)||(38839678-38839747)
[»] chr8 (10 HSPs)
chr8 (386-456)||(7590332-7590402)
chr8 (463-541)||(32166628-32166706)
chr8 (469-542)||(6630531-6630604)
chr8 (464-541)||(12736059-12736136)
chr8 (463-540)||(35574634-35574711)
chr8 (386-449)||(34695817-34695880)
chr8 (367-456)||(31475009-31475096)
chr8 (473-534)||(37010345-37010406)
chr8 (500-541)||(40700887-40700928)
chr8 (386-426)||(39280941-39280981)
[»] chr6 (3 HSPs)
chr6 (466-532)||(32047181-32047247)
chr6 (472-532)||(23577164-23577224)
chr6 (463-527)||(32342604-32342668)
[»] chr3 (7 HSPs)
chr3 (463-527)||(39341203-39341267)
chr3 (463-526)||(54437810-54437873)
chr3 (465-541)||(20519289-20519365)
chr3 (412-452)||(39341213-39341253)
chr3 (475-541)||(54437653-54437719)
chr3 (405-454)||(54437813-54437862)
chr3 (464-532)||(42091793-42091861)
[»] chr4 (7 HSPs)
chr4 (463-534)||(15131575-15131646)
chr4 (385-456)||(20512844-20512915)
chr4 (463-542)||(22050856-22050935)
chr4 (405-456)||(25062497-25062548)
chr4 (480-541)||(25062340-25062401)
chr4 (479-527)||(20512834-20512882)
chr4 (494-534)||(22050732-22050772)
[»] scaffold0564 (1 HSPs)
scaffold0564 (323-456)||(5452-5586)
[»] scaffold0047 (1 HSPs)
scaffold0047 (463-532)||(62729-62798)
[»] scaffold1743 (1 HSPs)
scaffold1743 (385-452)||(771-837)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 34176264 - 34176786
Alignment:
Q  18 gaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgct 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176264 gaaacaattcatcttcaaactctcaaatgttataagacccttgttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgct 34176363  T
Q  118 cctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176364 cctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgct 34176463  T
Q  218 aggaacaatgtgaaagcggatcaattattagcttgtgctagaagggtgttgtaagttgtgctttttatatnnnnnnnnttgtgttttctaaattgtgtga 317  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  34176464 aggaacaatgtgaaaggggattaattattagcttgtgctagaagggtgttgtaagttgtgctttttatat-aaaaaaattgtgttttctaaattgtgtga 34176562  T
Q  318 aactaagttttttctacattatcccttgaataattgagggtaatataccctatcagagaacaattatattttcttcatctttatttctacaatcagttac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34176563 aactaagttttttctacattatcccttgaataattgagggtaatataccctattagagaacaattatattttcttcatctttatttctacaatcagttac 34176662  T
Q  418 cattttcattttaagaatatcaaacttcttcatcttctttgttactcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctcctt 517  Q
    ||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||| ||| ||| |||||||||| |||| ||||||||||||||    
T  34176663 cattttcatcttaagaatatcaaacttcttcatcttcttcattactcttacaatcagttactattatcaccttaggaacatcaaaattcttcatctcctt 34176762  T
Q  518 catttaacatatgatcttcatctc 541  Q
    ||||||||||||||||||||||||    
T  34176763 catttaacatatgatcttcatctc 34176786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 34144143 - 34144412
Alignment:
Q  18 gaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgct 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||  ||||||||    
T  34144143 gaaacaattcatcttcaaactctcaaatgttataagacccttgttggcatccataagcaaatgaaacccgttgtaaagttcacctataaaaccttctgct 34144242  T
Q  118 cctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||| |||  |||||||||||||| ||||||| ||||||    
T  34144243 cctaaactcgcaaccatggatggaaagtagtcctcaaaatccatgtaaaaatctaaatccatgtgaaaaggtgtgagtgaaactttaagtagaggttgct 34144342  T
Q  218 aggaacaatgtgaaagcggatcaattattagcttgtgctagaagggtgttgtaagttgtgctttttatat 287  Q
    || ||||||| |||||  ||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  34144343 agtaacaatgcgaaaggagattaattattagcttgtgctagaagggtgtgttaagttgtgctttttatat 34144412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 34115049 - 34115192
Alignment:
Q  18 gaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgct 117  Q
    |||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| |||| || | ||||||||||||||||||  ||||||||    
T  34115049 gaaacaattcatcttcaagctctcaaatgttataagacctttgttcacatccataagcaaacgaaatccattgcaaagttcacctataaacccttctgct 34115148  T
Q  118 cctaaactcgcaaccatggatggaaagtagtcctcaaaatccaa 161  Q
    |||||||  | || ||||||||||||||||||||||||||||||    
T  34115149 cctaaacgtgaaatcatggatggaaagtagtcctcaaaatccaa 34115192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 463 - 542
Target Start/End: Complemental strand, 9050196 - 9050117
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 542  Q
    |||||| |||||||||||||||||| | | ||||| ||||||||||||||||| ||||| |||||||||||| |||||||    
T  9050196 tcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctca 9050117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 456
Target Start/End: Complemental strand, 2249061 - 2248953
Alignment:
Q  349 aattgagggtaatatacc-ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttctt 447  Q
    |||||||| |||| |||| |||||| |||| ||| ||||||||||||||||||||  || ||| ||||||||||||||| | || || || |||||||||    
T  2249061 aattgaggataatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttctt 2248962  T
Q  448 catcttctt 456  Q
    |||||||||    
T  2248961 catcttctt 2248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 463 - 534
Target Start/End: Original strand, 16576252 - 16576323
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 534  Q
    ||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||| ||||||    
T  16576252 tcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 16576323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 527
Target Start/End: Original strand, 35370402 - 35370466
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 527  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||| |||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacat 35370466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 452
Target Start/End: Original strand, 16576215 - 16576302
Alignment:
Q  365 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    |||||||| |||| |||||| ||||||||| |||| ||  |||||||| ||||||||||| | | ||||| |||||||||||||||||    
T  16576215 ccctatcaaagaaaaattatcttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatct 16576302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 16863445 - 16863515
Alignment:
Q  386 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 457  Q
    |||||||| ||||||||  |||||||||||||||||||||| | ||||| |||||| |||||||||||||||    
T  16863445 ttttcttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttcttt 16863515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 16863460 - 16863538
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    ||||||||||||||||||||||||||| | ||||| |||| |||||||||| ||| ||| || || |||||| ||||||    
T  16863460 tcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctc 16863538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 38577025 - 38576958
Alignment:
Q  385 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    ||||||||||| ||||||| || ||||||||||||||||||| | ||||| || ||| ||||||||||    
T  38577025 attttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatct 38576958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 541
Target Start/End: Complemental strand, 13712821 - 13712743
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    |||||| |||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||| ||||| | |||| ||||||    
T  13712821 tcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctccatctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 444
Target Start/End: Complemental strand, 13713045 - 13712948
Alignment:
Q  349 aattgagggtaatataccctatcagagaacaat--tatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaactt 444  Q
    |||||||| |||| |||||||||| |||| |||  |||||||| || || |||||| |||||||| ||||||||||| || |||| ||| ||||||||    
T  13713045 aattgaggataatttaccctatcaaagaaaaatcatatattttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaactt 13712948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 13712814 - 13712766
Alignment:
Q  409 atcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 457  Q
    |||||||||||||| ||| ||||||| |||||||||||| |||||||||    
T  13712814 atcagttaccatttccatcttaagaacatcaaacttctttatcttcttt 13712766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 541
Target Start/End: Complemental strand, 38577002 - 38576930
Alignment:
Q  469 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    ||||||||||||||||||||| | |||||  ||| ||||||||||| |||||| ||||| |||| | ||||||    
T  38577002 aatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctc 38576930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 541
Target Start/End: Complemental strand, 1027454 - 1027407
Alignment:
Q  494 aacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    |||| |||||||||| ||||  ||||||||||||||||||||||||||    
T  1027454 aacatcaaacttctttatcttattcatttaacatatgatcttcatctc 1027407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 541
Target Start/End: Complemental strand, 13712987 - 13712912
Alignment:
Q  466 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    ||||||| ||||||||||| ||||||  ||   ||||||| || |||||||||||||||||| |||||| ||||||    
T  13712987 tacaatcggttaccatttttatcttaaaaatttcaaacttttttatctccttcatttaacatgtgatctacatctc 13712912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 34115268 - 34115309
Alignment:
Q  246 tagcttgtgctagaagggtgttgtaagttgtgctttttatat 287  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  34115268 tagcttgtgctagaagggtgtgttaagttgtgcttcttatat 34115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 527
Target Start/End: Original strand, 16576421 - 16576485
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 527  Q
    ||||||||||| ||| ||||||||| | |  |||| ||||| ||||||| |||||||||||||||    
T  16576421 tcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacat 16576485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 539
Target Start/End: Original strand, 34176882 - 34176955
Alignment:
Q  464 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatc 539  Q
    |||||||| ||||||||||||||||| | ||  ||||||||| | ||||| ||||||| ||||| |||| ||||||    
T  34176882 cttacaattagttaccattttcatctcaaga--accaaacttgtacatcttcttcattcaacatgtgatattcatc 34176955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 541
Target Start/End: Original strand, 35371117 - 35371193
Alignment:
Q  465 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    ||||||||| ||||||||||||| | | ||||| ||||||||||  |  |||||||||||||| |||| | ||||||    
T  35371117 ttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctc 35371193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 324 - 450
Target Start/End: Original strand, 43208671 - 43208798
Alignment:
Q  324 gttttttctacattatcccttgaataattgagggtaatata-ccctatcagagaacaa-ttatattttcttcatctttatttctacaatcagttaccatt 421  Q
    |||||||||||||||||||||||  ||||||||||||| || |||||||  | || || |||| |||||||||||||||||  |||||||| ||||||||    
T  43208671 gttttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttat-ttttcttcatctttattcttacaatcaattaccatt 43208769  T
Q  422 ttcattttaagaatatcaaacttcttcat 450  Q
    || ||||||||||||||||| | ||||||    
T  43208770 tttattttaagaatatcaaattccttcat 43208798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 23944080 - 23944158
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    ||||||||| |||| |||||||||||||| ||||| ||||||||||| |||| |||||| ||||| |||| | ||||||    
T  23944080 tcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctc 23944158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 32988667 - 32988565
Alignment:
Q  325 ttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatttt 423  Q
    |||||| |||||||||||| ||  ||||| ||||||| ||| | ||||| |||| ||| ||||||||||||||||||||  ||||||||| || ||||||    
T  32988667 ttttttatacattatccctcgatgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcatttt 32988568  T
Q  424 cat 426  Q
    |||    
T  32988567 cat 32988565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 540
Target Start/End: Complemental strand, 32138957 - 32138880
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 540  Q
    ||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||| || ||||| | |||| |||||    
T  32138957 tcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatct 32138880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 534
Target Start/End: Original strand, 34891385 - 34891440
Alignment:
Q  479 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 534  Q
    ||||||||| ||| ||||| |||||||||| |||| ||||||||||||| ||||||    
T  34891385 cattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 534
Target Start/End: Original strand, 34891537 - 34891608
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 534  Q
    |||||| || ||||| |||||| |||| | ||||| |||| |||||||||||||||||| ||||| ||||||    
T  34891537 tcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatct 34891608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 442
Target Start/End: Complemental strand, 27651616 - 27651540
Alignment:
Q  365 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaac 442  Q
    |||||||| |||| ||||   |||||||||||||||||| |||||| ||| ||||||||||| | ||||| |||||||    
T  27651616 ccctatcaaagaaaaattcatttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac 27651540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 7463858 - 7463902
Alignment:
Q  408 aatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    |||| |||| ||||||||||| ||||| |||||||||||||||||    
T  7463858 aatcggttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 29152398 - 29152350
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcat 511  Q
    |||||||||||||||| |||||||||| |  |||| |||||||||||||    
T  29152398 tcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 32138951 - 32138907
Alignment:
Q  408 aatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    ||||| ||||||||||||| ||||||| |||||| ||||||||||    
T  32138951 aatcaattaccattttcatcttaagaacatcaaaattcttcatct 32138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 463 - 540
Target Start/End: Complemental strand, 2243387 - 2243310
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 540  Q
    ||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||||| ||||| |||||| |||||    
T  2243387 tcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 538
Target Start/End: Original strand, 972816 - 972963
Alignment:
Q  385 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctttgttactcttacaatcagttaccatttt 484  Q
    ||||| ||| ||||||||| || ||| ||||| ||||||||| | ||||| |||||||||||||||||      ||| | ||  |||||||| |||||||    
T  972816 atttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatct------ttatttttgaaatcagttgccatttt 972909  T
Q  485 catcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcat 538  Q
    ||||  | ||| | |||| ||||||||||| |||||||||||| | ||||||||    
T  972910 catcacaagaaaatcaaatttcttcatctctttcatttaacatgttatcttcat 972963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 540
Target Start/End: Original strand, 14138549 - 14138626
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 540  Q
    ||||||||||| ||||||||||||||||| ||| | |||||||  ||||||| |||||| ||||| | ||||||||||    
T  14138549 tcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatct 14138626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 473 - 534
Target Start/End: Complemental strand, 39808293 - 39808232
Alignment:
Q  473 agttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 534  Q
    ||||| |||||||| |||| || || ||||||| ||||||||||||||||||||||||||||    
T  39808293 agttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacatatgatct 39808232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 541
Target Start/End: Complemental strand, 7982445 - 7982373
Alignment:
Q  469 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    ||||||||||||||||||||||  ||||| |||| ||||||  ||| ||| |||||||| |||| ||||||||    
T  7982445 aatcagttaccattttcatcttgagaacatcaaatttcttcgactctttcttttaacatgtgatattcatctc 7982373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 539
Target Start/End: Complemental strand, 22780419 - 22780339
Alignment:
Q  459 ttactcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatc 539  Q
    ||||| || |||| ||| ||||||||||||| |  ||||  |||||||||||| ||||||||| ||||| |||||||||||    
T  22780419 ttactatttcaatgagtcaccattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatc 22780339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 542
Target Start/End: Original strand, 973115 - 973194
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 542  Q
    ||||||||| ||||| |||||| |||| |  ||||  ||| |||||||||||||| ||| ||||| ||||||||||||||    
T  973115 tcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctca 973194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 444
Target Start/End: Original strand, 14138552 - 14138591
Alignment:
Q  405 tacaatcagttaccattttcattttaagaatatcaaactt 444  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  14138552 tacaatcaattaccattttcatcttaagaatatcaaactt 14138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 41264532 - 41264583
Alignment:
Q  401 tttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    ||||||||||||||||| |||||||| | ||||| |||||| ||||||||||    
T  41264532 tttctacaatcagttacaattttcatatcaagaacatcaaatttcttcatct 41264583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 41264536 - 41264595
Alignment:
Q  466 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaac 525  Q
    ||||||||||||| |||||||| | | ||||| |||| ||||||||||| ||||||||||    
T  41264536 tacaatcagttacaattttcatatcaagaacatcaaatttcttcatctctttcatttaac 41264595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 527
Target Start/End: Complemental strand, 39730363 - 39730313
Alignment:
Q  477 accattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 527  Q
    ||||||||||||| | ||||| ||||||| |||||||| ||||||||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacat 39730313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 2243384 - 2243339
Alignment:
Q  405 tacaatcagttaccattttcattttaagaatatcaaacttcttcat 450  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||    
T  2243384 tacaattagttaccattttcatctcaagaacatcaaacttcttcat 2243339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 17739907 - 17739948
Alignment:
Q  500 aaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    |||||||||||||| ||||||||||||| |||| ||||||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctc 17739948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 456
Target Start/End: Complemental strand, 17736987 - 17736916
Alignment:
Q  384 tattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 456  Q
    |||||| ||||||||||| | |||||||  |||||||||| || |||||||||||||| ||||| | ||||||    
T  17736987 tatttttttcatctttatct-tacaatcgattaccatttttatcttaagaatatcaaatttctttaccttctt 17736916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 542
Target Start/End: Original strand, 40483716 - 40483764
Alignment:
Q  494 aacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 542  Q
    |||| ||||||||||||||||  ||||| ||||| ||||||||||||||    
T  40483716 aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctca 40483764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 463 - 540
Target Start/End: Original strand, 68101 - 68178
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 540  Q
    ||||||||| |||||||||||| || | | ||||| | ||||||||||||||||||||||||||| |||||| |||||    
T  68101 tcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 463 - 540
Target Start/End: Original strand, 52432665 - 52432742
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 540  Q
    ||||| ||||| ||||||||||||||| | |||||  |||||||||||||||||||||||||||  |||||| |||||    
T  52432665 tcttataatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 540
Target Start/End: Original strand, 10775167 - 10775244
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 540  Q
    ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||| || ||||| | || |||||||    
T  10775167 tcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacatctaattttcatct 10775244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 519
Target Start/End: Original strand, 46080975 - 46081031
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttca 519  Q
    ||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||    
T  46080975 tcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttca 46081031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 3231964 - 3232036
Alignment:
Q  465 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttca 537  Q
    |||||||||||| | |||||||||| | ||||| ||||||||||||| || |||||| ||||| |||| ||||    
T  3231964 ttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattca 3232036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 10775173 - 10775217
Alignment:
Q  408 aatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||    
T  10775173 aatcaattaccattttcatcttaagaacatcaaacttcttcatct 10775217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 2534504 - 2534437
Alignment:
Q  385 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    ||||||||||||||||||| || ||| | |||||| |||||| | || || |||||||||||||||||    
T  2534504 attttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatct 2534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 444
Target Start/End: Original strand, 24873772 - 24873811
Alignment:
Q  405 tacaatcagttaccattttcattttaagaatatcaaactt 444  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24873772 tacaatcaattaccattttcattttaagaagatcaaactt 24873811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 444
Target Start/End: Original strand, 24874605 - 24874644
Alignment:
Q  405 tacaatcagttaccattttcattttaagaatatcaaactt 444  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24874605 tacaatcaattaccattttcattttaagaagatcaaactt 24874644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 541
Target Start/End: Complemental strand, 2534475 - 2534409
Alignment:
Q  475 ttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    |||||| |||||||| |  |||| ||||||||||||||||||| ||||  |||| ||||||||||||    
T  2534475 ttaccactttcatctcaaaaacatcaaacttcttcatctccttaatttcgcataagatcttcatctc 2534409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 52432654 - 52432715
Alignment:
Q  391 ttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    ||||||||||||  || ||||| ||||||||||||| | ||||| || ||||||||||||||    
T  52432654 ttcatctttattcttataatcaattaccattttcatctcaagaacattaaacttcttcatct 52432715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 450
Target Start/End: Original strand, 3231946 - 3232010
Alignment:
Q  386 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcat 450  Q
    |||||||||| ||||| | ||||||||||| | |||||||| | ||||| | |||||||||||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcat 3232010  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 456
Target Start/End: Complemental strand, 38839747 - 38839678
Alignment:
Q  385 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 456  Q
    ||||| ||||||||||||  |||||| |||||  |||||||| | ||||| ||||||| |||||||||||||    
T  38839747 atttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttctt 38839678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 7590402 - 7590332
Alignment:
Q  386 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 456  Q
    |||||||| ||||||||  ||||||| ||||||| |||||||| ||||| |||||| ||||||||||||||    
T  7590402 ttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttcttcatcttctt 7590332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 463 - 541
Target Start/End: Complemental strand, 32166706 - 32166628
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    |||||| |||| ||| ||||||||||| | ||||| ||||||||||||||||||| ||| ||||| | |||||||||||    
T  32166706 tcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctc 32166628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 469 - 542
Target Start/End: Complemental strand, 6630604 - 6630531
Alignment:
Q  469 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 542  Q
    ||||| ||||||||||||||||| || ||  ||| |||||||||||||||||||||||  |||||| |||||||    
T  6630604 aatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctca 6630531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 464 - 541
Target Start/End: Original strand, 12736059 - 12736136
Alignment:
Q  464 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    |||||||| ||||||||||| |||||||  |||| |||||||||||||||||||| || ||||| |||| | ||||||    
T  12736059 cttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 540
Target Start/End: Complemental strand, 35574711 - 35574634
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 540  Q
    ||||||||| |||||| |||||||||||| ||||| |||| || |||||||| |||||| ||||| | |||| |||||    
T  35574711 tcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatct 35574634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 34695817 - 34695880
Alignment:
Q  386 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttca 449  Q
    |||||||||||||||||  |||||||||||| ||||||| ||| || | ||||||| |||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttca 34695880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 456
Target Start/End: Original strand, 31475009 - 31475096
Alignment:
Q  367 ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 456  Q
    |||||| |||| ||| ||||||||||| |||| |||| |  |||||||||| ||||| || | ||||| |||||||||||||||||||||    
T  31475009 ctatcaaagaaaaatcatattttcttcctctt-atttttg-aatcagttactatttttatctcaagaacatcaaacttcttcatcttctt 31475096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 534
Target Start/End: Complemental strand, 37010406 - 37010345
Alignment:
Q  473 agttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 534  Q
    ||||||||||||||||| |  |||| ||||||| ||||| || |||||||||||| ||||||    
T  37010406 agttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatct 37010345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 40700887 - 40700928
Alignment:
Q  500 aaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    |||||| ||||| |||||||||||||||| ||||||||||||    
T  40700887 aaactttttcatatccttcatttaacatacgatcttcatctc 40700928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 39280941 - 39280981
Alignment:
Q  386 ttttcttcatctttatttctacaatcagttaccattttcat 426  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  39280941 ttttcttcatctttattcttaaaatcagttaccattttcat 39280981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 466 - 532
Target Start/End: Original strand, 32047181 - 32047247
Alignment:
Q  466 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 532  Q
    |||| ||| ||||||||||||||| | ||||| |||||||||||||||| |||||| ||||||||||    
T  32047181 tacattcatttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 532
Target Start/End: Original strand, 23577164 - 23577224
Alignment:
Q  472 cagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 532  Q
    |||||||||||||||||| |  |||| || |||||| ||||||||||||| ||||| ||||    
T  23577164 cagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgat 23577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 527
Target Start/End: Original strand, 32342604 - 32342668
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 527  Q
    ||||||||||| ||| ||||||||||| |  |||| ||||||| |||||||| |||||| |||||    
T  32342604 tcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacat 32342668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 527
Target Start/End: Original strand, 39341203 - 39341267
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 527  Q
    |||||| || ||||||||||||||||||| ||| | ||||||| ||||||||||||||| |||||    
T  39341203 tcttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacat 39341267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 526
Target Start/End: Original strand, 54437810 - 54437873
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaaca 526  Q
    |||||||||||||||||||||| |||| |  |||| ||||||||||||||| | ||||||||||    
T  54437810 tcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaaca 54437873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 541
Target Start/End: Complemental strand, 20519365 - 20519289
Alignment:
Q  465 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    |||||||| || ||||||||||||| | ||||  |||| ||||||||||| |||||| ||||| |||||| ||||||    
T  20519365 ttacaatccgtaaccattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctc 20519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 39341213 - 39341253
Alignment:
Q  412 agttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  39341213 agttaccattttcatcttaagaatatcaaactttttcatct 39341253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 541
Target Start/End: Original strand, 54437653 - 54437719
Alignment:
Q  475 ttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    ||||||||||||||| |  ||||  |||||||||||| ||||||||||||||| | | |||||||||    
T  54437653 ttaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctc 54437719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 54437813 - 54437862
Alignment:
Q  405 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttc 454  Q
    ||||||||||||||||||| || | || || |||||||||||||||||||    
T  54437813 tacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttc 54437862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 532
Target Start/End: Complemental strand, 42091861 - 42091793
Alignment:
Q  464 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 532  Q
    |||||||| | ||| ||||||||||| |  |||| ||||||| |||||||| |||||||||||| ||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 534
Target Start/End: Complemental strand, 15131646 - 15131575
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 534  Q
    |||||| ||||||||||||||| |||| | ||||| |||| |||||||||||||||||| | ||| ||||||    
T  15131646 tcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatct 15131575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 456
Target Start/End: Complemental strand, 20512915 - 20512844
Alignment:
Q  385 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 456  Q
    ||||||||||||||||||| || ||||| ||  ||||||||| |||  || |||||||||||||||||||||    
T  20512915 attttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttctt 20512844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 542
Target Start/End: Original strand, 22050856 - 22050935
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 542  Q
    ||||||||| ||||| |||||| ||||||  ||||  ||  |||||||||||||||||| ||||| ||||||||||||||    
T  22050856 tcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctca 22050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 456
Target Start/End: Original strand, 25062497 - 25062548
Alignment:
Q  405 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 456  Q
    |||||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  25062497 tacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttctt 25062548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 541
Target Start/End: Original strand, 25062340 - 25062401
Alignment:
Q  480 attttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 541  Q
    ||||| |||||  ||||| ||||||||||||||| ||||||| ||||| |||||||||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctc 25062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 527
Target Start/End: Complemental strand, 20512882 - 20512834
Alignment:
Q  479 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 527  Q
    |||||||||||||  |||| ||||||||||||||| |||||||||||||    
T  20512882 cattttcatcttataaacatcaaacttcttcatcttcttcatttaacat 20512834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 22050732 - 22050772
Alignment:
Q  494 aacaccaaacttcttcatctccttcatttaacatatgatct 534  Q
    |||| ||||||||||||| ||||||||||||||| ||||||    
T  22050732 aacatcaaacttcttcatttccttcatttaacatgtgatct 22050772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 456
Target Start/End: Complemental strand, 5586 - 5452
Alignment:
Q  323 agttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatt 421  Q
    |||||||||||||||| | ||| |  |||||| |||||| ||||| ||||| | || ||| |  ||||||||||||||||   || |||||| ||| |||    
T  5586 agttttttctacattacctcttaacgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaatt 5487  T
Q  422 ttcattttaagaatatcaaacttcttcatcttctt 456  Q
    ||||| | || || |||||||||||||||||||||    
T  5486 ttcatctcaaaaagatcaaacttcttcatcttctt 5452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 532
Target Start/End: Complemental strand, 62798 - 62729
Alignment:
Q  463 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 532  Q
    ||||| ||||||||| || ||||||||||  |||| |||||||||| ||||||||||| ||| |||||||    
T  62798 tcttagaatcagttatcaatttcatcttaaaaacatcaaacttctttatctccttcatataagatatgat 62729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 452
Target Start/End: Original strand, 771 - 837
Alignment:
Q  385 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 452  Q
    ||||||||||| ||||||| |||| ||| ||| ||||||| ||| ||| |||||||||||||||||||    
T  771 attttcttcatttttatttttaca-tcatttatcattttcctttcaagtatatcaaacttcttcatct 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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