View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_162 (Length: 224)
Name: NF6131_low_162
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_162 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35466041 - 35465836
Alignment:
| Q |
1 |
aaagttgaaccgaatatccttcatgaaagatatctgcgccaccaaactgaagagcttgagaaccaatatcaggtggatgaacggtagaaacacccaacca |
100 |
Q |
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| T |
35466041 |
aaagttgaaccaaatatccttcatgaaagatatatgtgccaccaaactgaagagcttgagaaccaatatcatgtggatgaacggtagaaacacccagcca |
35465942 |
T |
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| Q |
101 |
accaagaactagccgccaagtaccaccaaagaattcacaatccatgaagagatgattaattgtttccttgaccgcgacctccaacacataaggagtccga |
200 |
Q |
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| T |
35465941 |
accaagaactagccgccaagtaccaccaaagaattcacaatccatgaagagatgattaattgtttccttgaccgcgacctccagcacataaggagtccaa |
35465842 |
T |
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| Q |
201 |
aattat |
206 |
Q |
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|||||| |
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| T |
35465841 |
aattat |
35465836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 13059122 - 13059229
Alignment:
| Q |
27 |
aagatatctgcgccaccaaactgaagagcttgagaaccaatatcaggtggatgaacggtagaaacacccaaccaaccaagaactagccgccaagtaccac |
126 |
Q |
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| T |
13059122 |
aagatatgtgcgcaaccaaactgtagagtgtaagaactgatatcagctagatgaacggtagaaacacccaaccaactaagaactattcgctaagtacgac |
13059221 |
T |
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| Q |
127 |
caaagaat |
134 |
Q |
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| T |
13059222 |
aaaagaat |
13059229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 34983133 - 34982972
Alignment:
| Q |
2 |
aagttgaaccgaatatccttcatgaa-agatatctgcgccaccaaactgaagagcttgagaaccaatatcaggtggatgaacggtagaaacacccaacca |
100 |
Q |
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|||||||||| |||||||||| |||| | |||| || |||||||||| || ||| | ||| ||||||| |||||||| |||||||||||| |||| |
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| T |
34983133 |
aagttgaacctaatatccttcttgaagacatatgcgcaccaccaaactaaaaagcatcggaaatgatatcagctggatgaatggtagaaacacctgacca |
34983034 |
T |
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| Q |
101 |
accaagaactagccgccaagtaccaccaaagaattcacaatccatgaagagatgattaattg |
162 |
Q |
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|| || || ||| |||||||||||| |||||||| |||||||||| ||| |||||||||| |
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| T |
34983033 |
actaaaaattaggcgccaagtaccattaaagaattaacaatccatgtagaattgattaattg |
34982972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 13060526 - 13060587
Alignment:
| Q |
132 |
aattcacaatccatgaagagatgattaattgtttc--cttgaccgcgacctccaacacataa |
191 |
Q |
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|||||||||||||| |||| ||||||||||||||| ||||| ||| | ||||||||||||| |
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| T |
13060526 |
aattcacaatccataaagatatgattaattgtttcctcttgaacgcaagctccaacacataa |
13060587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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