View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_17 (Length: 525)
Name: NF6131_low_17
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 13466848 - 13466351
Alignment:
| Q |
19 |
tgatgtagtacattgaagctagctacctattaagtaaattaacactagaaccgttacttaagagtattagccacatcaatgacaaatcggtatttaacat |
118 |
Q |
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| T |
13466848 |
tgatgtagtacattgaagctagctacctattaagtaaattaacactagaaccgttacttaagagtattagccacatcaatgacaaatcggtatttaacat |
13466749 |
T |
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| Q |
119 |
cattctttgcaagtctctcaaaagcagtgttcacataatccattgaaatcacttcaatatctgctgtgatattgtgcttagctgcaaaatcaatcatgtc |
218 |
Q |
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| T |
13466748 |
cattctttgcaagtctctcaaaagcagtgttcacataatccattgaaatcacttcaatatctgctgtaatattgtgctttgctgcaaaatcaatcatgtc |
13466649 |
T |
|
| Q |
219 |
ttggctctctttcattcctccaccagcactacctgcaattatcttcctccctaatttnnnnnnnnnnngattcttaattagttccaagcagaaattaatc |
318 |
Q |
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| T |
13466648 |
ttggctctctttcattcctcccccagcactacctgcaattatcttcctccctaattt---aaaaaaatgattcttaattagttccaagcagaaattaatc |
13466552 |
T |
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| Q |
319 |
aagagtaaaaataattatcaagcattacaaggttatttataatttaccagacattaaaggcatatatggcaagataggaggtgtaactgatgcaccaact |
418 |
Q |
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| T |
13466551 |
aagagttaaaataattatcaagcattacaaggttatttataatttaccagacattaaaggcatatatggcaagataggaggtgtaactgatgcaccaact |
13466452 |
T |
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| Q |
419 |
aaaatcaatttgccacatgtcttcaacatttcaattaatgggtggagtgaatgagggcctgaaactgtgtctatgatgccgtccattgtgtcctttgctt |
518 |
Q |
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| T |
13466451 |
aaaattaatttgccacatgtcttcaacatttcaattaatgggtagagtgaatgagggcctgaaactgtgtctatgatgccgtccattgtgtcctttgctt |
13466352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 13394427 - 13394332
Alignment:
| Q |
145 |
gtgttcacataatccattgaaatcacttcaatatctgctgtgatattgtgcttagctgcaaaatcaatcatgtcttggctctctttcattcctcca |
240 |
Q |
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||||| |||||||||| || || ||||| || |||| | | |||||||| ||||| |||||||||||||| ||||| |||||||||| |||||| |
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| T |
13394427 |
gtgttaacataatccactggtatgacttcgatgtctggttttatattgtgtttagcagcaaaatcaatcatttcttgtgtctctttcatgcctcca |
13394332 |
T |
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