View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_173 (Length: 202)
Name: NF6131_low_173
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_173 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 8e-97; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 28264901 - 28265095
Alignment:
| Q |
1 |
cacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28264901 |
cacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgcc |
28265000 |
T |
|
| Q |
101 |
aaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccctttgctt |
195 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28265001 |
aactcaagttctttgtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgctt |
28265095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 28304918 - 28305112
Alignment:
| Q |
1 |
cacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28304918 |
cacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgcc |
28305017 |
T |
|
| Q |
101 |
aaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccctttgctt |
195 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28305018 |
aactcaagttctttgtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgctt |
28305112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 28294716 - 28294910
Alignment:
| Q |
1 |
cacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28294716 |
cacagcaacttgtaaatctaaatcagcaaagtaacctttataaacagctccaaaaccaccttgacccaactttctatccttagagaagttattggttgcc |
28294815 |
T |
|
| Q |
101 |
aaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccctttgctt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28294816 |
aaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaagatcatcattcattgaagtcaaatgcatagcctcttccttttgctt |
28294910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 28278970 - 28278784
Alignment:
| Q |
1 |
cacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgcc |
100 |
Q |
| |
|
||||||||| |||||||| |||| ||||| ||||||| | || |||||||| |||||||||||||||||||||||| |||| |||||||| || || |
|
|
| T |
28278970 |
cacagcaaccggtaaatctggatcaaaaaagttacctttatatacagctccaaacccaccttgacccaactttctatccctagagaagttattagtggct |
28278871 |
T |
|
| Q |
101 |
aaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttcc |
187 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||| |
|
|
| T |
28278870 |
aaattaagttctttgtaggtgaacctccttggccctgctcctctttcaagatcgtcattcattgaagttaaactcatagcctcttcc |
28278784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 28288808 - 28288649
Alignment:
| Q |
28 |
aaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgccaaatcaagttctttgtaggtgaacctt |
127 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||| || |||||||| | | ||| |||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
28288808 |
aaagtaacctttataaacagctccaaaaccaccttgacctaattttctatcgtcggtaaatttattggtagccaaatcaagttcttggtaggtaaacctc |
28288709 |
T |
|
| Q |
128 |
cttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttcc |
187 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
28288708 |
cttggccctgctcctctttgaaggtcatcattcattgttcttaaatgcatagcctcttcc |
28288649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University