View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_23 (Length: 507)
Name: NF6131_low_23
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 49298491 - 49298012
Alignment:
| Q |
1 |
agagagatgaagtgaatgtgagctatggtatagtgatggagatatagatgtgatcatatctttctgtttagaaacttttttgttaccgatatcattgtat |
100 |
Q |
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| T |
49298491 |
agagagatgaagtgaatatgagctatggtatagtgatggagatatagatgttatcatatctttctgtttagaaacttttttgttatcga-atcattgtat |
49298393 |
T |
|
| Q |
101 |
atgtnnnnnnnnnnnnnnntgtcgtcaatatttgaacgagtgtaaactctaatgactattttgaccctgtgaataatgttattgaaatgactctcttaac |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
49298392 |
atggaggggggcacc-----gtcgtcaatatttgaacgagtgtaaactctaatgactattttgaccctgtgaat---gtaattgaaatgactctcttaac |
49298301 |
T |
|
| Q |
201 |
cgcgtgaggatcatgatcaaaaacgaaaaaggtattaacttgatttcccgcccaaaacagggaagttttgcacggaataaggaagaaattcaatgtcttg |
300 |
Q |
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| T |
49298300 |
cgcgtgaggatcatgatcgaaaacgaaaaaggtattaacttgatttcccgcccaaaacagggaagttttgcacggaataaggaagaaattcaatgtcttg |
49298201 |
T |
|
| Q |
301 |
gtatatctctataaacggcaacggcaatccatgtgatta-nnnnnnnncttaattattacttttaagttttagcttctttaataaaacaaactcatatct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49298200 |
gtatatctctataaacggcaacggcaatccatgtgattatttttttttcttaattattacttttaagttttagcttctttaataaaacacactcatatct |
49298101 |
T |
|
| Q |
400 |
tttgtttccagatttgttaatgaagaaaggccggaacactaggtgtcatctagaaggaacatttggcaccgtatgtgggaagagaaaga |
488 |
Q |
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| T |
49298100 |
tttgtttcctgatttgttaatgaagaaaggccggaacactaggtgtcatctagaaggaacatttggcaccgtatgtgggaagagaaaga |
49298012 |
T |
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