View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_24 (Length: 494)
Name: NF6131_low_24
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_24 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 10283834 - 10284307
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
10283834 |
ctcaggagccactttaggattcaaatttgaaccaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctcctgcataatgtctcagc |
10283933 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
10283934 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccagttgcttaatcctg |
10284033 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10284034 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
10284133 |
T |
|
| Q |
301 |
accttctttgatatcagtaacaagttcttcccaaacttgttcaaatgttctgaaagcattcacaatgctatgtgcaaatgtggacgaaaccaattgaact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10284134 |
accttctttgatatcagtaacaagttcttcccaaatttgttcaaatgttctgaaagcattcacaatgctatgtgcaaatgtggacgaaaccaattgaact |
10284233 |
T |
|
| Q |
401 |
tcttctctgaaaagtagtccacataaaaggtggcagtagagtgtttgttgaaaatcaggactgaatgttacatc |
474 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10284234 |
tcttctctgaaaagtagtccacataagaggtggcagtagagtgtttgttgaaaatcaggactgaatgttacatc |
10284307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 10243010 - 10243475
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||| ||||||||||| ||| ||||||| ||||||| | |
|
|
| T |
10243010 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagagccatactcagaagtcaacaaaggaacctctcctgcatagtgtctcaac |
10243109 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
10243110 |
tttttcacataaggttccattgcaccagtcatgatcccttgaacatacttaacattaggaaaaagctctggtatcagtccataccaattgctcaatccta |
10243209 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10243210 |
tgcatttcttgtggatcaagttagctagttcaggatttggtttcagcagttttgacattgcagttctaatggatggatgtgtgattctactgctaagaac |
10243309 |
T |
|
| Q |
301 |
accttctttgatatcagtaacaagttcttcccaaacttgttcaaatgttctgaaagcattcacaatgctatgtgcaaatgtggacgaaaccaattgaact |
400 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||| ||||||| | |
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|
| T |
10243310 |
accttctttgatgtcagtaataagttcttcccaaacttgttcaaaggttctgaaagcatagacaatgctatgtgcaaatgttgatgaaattaattgaatt |
10243409 |
T |
|
| Q |
401 |
tcttctctgaaaagtagtccacataaaaggtggcagtagagtgtttgttgaaaatcaggactgaat |
466 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
10243410 |
tcttctctgcaaagcagtccacataagaggtggcagtagagtgattggtgaaaattaggactgaat |
10243475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 10272592 - 10273062
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||| | ||||||||| ||| ||||||| ||||||| | |
|
|
| T |
10272592 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagagccatactcagaagtcaccaaaggaacctctcctgcatagtgtctcaac |
10272691 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
10272692 |
tttttcaagtaatgttccattgaacctgtcatgatccctagaagatacttagcattagggaaaagctccggtatcaatccataccaattgctcaatccta |
10272791 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10272792 |
tgcatttcttgtggatcaagttagctagttcaggatttggtgtcagcagtttagacatagcagttctaatgaatggatgtgtgattctactgctaagaac |
10272891 |
T |
|
| Q |
301 |
accttctttgatatcagtaacaagttcttcccaaacttgttcaaatgttctgaaagcattcacaatgctatgtgcaaatgtggacgaaaccaattgaact |
400 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||| || |||| |
|
|
| T |
10272892 |
accttctctgatatcagtaacaagttcctcccaaacttgttcaaatgttctgaaagcattcacaaggctgtgtgcaaatggtgctgaaattaaactaact |
10272991 |
T |
|
| Q |
401 |
tcttctctgaaaagtagtccacataaaaggtggcagtagagtgtttgttgaaaatcaggactgaatgttac |
471 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
10272992 |
tcttctctgaaaagtagtccacataagaggtggcagtagagtgtttgctgaaaatcaggactaaatattac |
10273062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 10264895 - 10265365
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||| ||||||| | |
|
|
| T |
10264895 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagcaccatattcagaagtcaacaaaggaacctctcctgcatagtgtctcaac |
10264994 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
10264995 |
tttttcaagtaatgttccattgaacctgtcatgattcctagaacatacttaacattaggaaaaagttctggtatcaatccataccaatcgctcaatccta |
10265094 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
10265095 |
tgcatttcttgtggatcaagttagctagttcaggatttggtttcagcagtttagacatagcagttctaatggatggatgtgttaccctattgctaagaac |
10265194 |
T |
|
| Q |
301 |
accttctttgatatcagtaacaagttcttcccaaacttgttcaaatgttctgaaagcattcacaatgctatgtgcaaatgtggacgaaaccaattgaact |
400 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| || |||| || |||| |
|
|
| T |
10265195 |
accttctctgatatcaaaaacaagttcctcccaaacttgttcaaatgttctgaaagcatacacaaggctgtgtgcaaatgttgatgaaattaaactaact |
10265294 |
T |
|
| Q |
401 |
tcttctctgaaaagtagtccacataaaaggtggcagtagagtgtttgttgaaaatcaggactgaatgttac |
471 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||| ||| |||||||| ||||| ||| |||| |
|
|
| T |
10265295 |
tcttctctgaaaaatagtccacataagaggtgacagtagagtgattggtgaaaatctggactaaatattac |
10265365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 306
Target Start/End: Original strand, 13979838 - 13979996
Alignment:
| Q |
146 |
tacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctgagcatttcttgtggatcaagttagctagttcaggatttggtttca |
245 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||| ||||||||||| | || ||| ||||| |||||||| | || ||||| ||| ||||||||||| | |
|
|
| T |
13979838 |
tacttcgcattaggaaacaactctggtaacaaaccataccaattattcaaccctagacattttttgtggattatgtcagctaattctggatttggtttga |
13979937 |
T |
|
| Q |
246 |
gcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaacaccttc |
306 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||||| ||||| |||||| |||||||| ||||| |
|
|
| T |
13979938 |
gcaatttagacatag--attcgaatcgatggatctgtgactctactactaagaactccttc |
13979996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 146 - 426
Target Start/End: Complemental strand, 48367773 - 48367493
Alignment:
| Q |
146 |
tacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctgagcatttcttgtggatcaagttagctagttcaggatttggtttca |
245 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| |||||||| |||||||||||| ||| | |||||||| | ||| |||| ||| ||||||||||| | |
|
|
| T |
48367773 |
tactttgcattcggaaaaagctccggtatcaaaccataccagttgcttaatcctatacatcttttgtggattatgttcgctaattctggatttggtttga |
48367674 |
T |
|
| Q |
246 |
gcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaacaccttctttgatatcagtaacaagttcttcccaaacttgttcaaa |
345 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||| |||| ||| || ||||||||||||||| | |||||| || ||| |||||||||||||||||||| |
|
|
| T |
48367673 |
gcaatttagacatagcagttcgaatggagggaaccgtgactctgctactaagaacaccttctcttatatcattacaaagctcttcccaaacttgttcaaa |
48367574 |
T |
|
| Q |
346 |
tgttctgaaagcattcacaatgctatgtgcaaatgtggacgaaaccaattgaacttcttctctgaaaagtagtccacataa |
426 |
Q |
| |
|
| |||||| |||| |||||||||||||||||||| || | ||||||||||| || || | ||||| |||||| ||||| |
|
|
| T |
48367573 |
ggatctgaaggcatgaacaatgctatgtgcaaatgttgaacataccaattgaacctcctcgcggaaaattagtccgcataa |
48367493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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