View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_3 (Length: 1015)

Name: NF6131_low_3
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_3
NF6131_low_3
[»] chr4 (1 HSPs)
chr4 (19-1004)||(6118333-6119318)


Alignment Details
Target: chr4 (Bit Score: 914; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 914; E-Value: 0
Query Start/End: Original strand, 19 - 1004
Target Start/End: Original strand, 6118333 - 6119318
Alignment:
Q  19 ggatcctccacctcccatcaccatcgaccaccgcagaggcaaccccaagtttgaccaaccgttgaccttgagaaaaactatgtgtagcaaaaggagcact 118  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  6118333 ggatcctccacctctgatcaccatcgaccatcgcagaggcaaccccaagtttgatcaatcgttgaccttgagaaaaactatgtgtagcaaaaggagcact 6118432  T
Q  119 acctaaattcacttcaataattcccacaacaggcaaaggcacgctaacaacaacatcaaaccctacaccatacaacactgtttcaggcacttccaatatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  6118433 acctaaattcacttcaataattcccacaacaggcaaaggcacgctcacaacaacatcaaatcctacaccatacaacactgtctcaggcacttccaatatc 6118532  T
Q  219 tcgggtcgaatattcgccttatccgaatccaaatactccggtgaaaatgcttcaatttttaactctgtcgcaaactcaacatcctcaaaacgataaaaca 318  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6118533 ttgggtcgaatattcgccttatccgaatccaaatactccggtgaaaatgcttcaatttttaactctgtcgcaaactcaacatccacaaaacgataaaaca 6118632  T
Q  319 catgcgggttactacctgctagtaaaacccgtccatccggtaacaaattcgccgttgaatgataaagtctcggcacagtacccggattcaaaaccataaa 418  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6118633 catgcgggttactacccgctagtaaaacccgtccatccggtaacaaattcgccgttgaatgataaagtctcggcacagtacccggattcaaaaccataaa 6118732  T
Q  419 ccgtaacccaaccggttcaccaggtcgatataaaaccggattcaaacacggatccgaacccatttcaaaaccttgtgtacctttcatagctccatttata 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6118733 ccgtaacccaaccggttcaccaggtcgatataaaaccggattcaaacacggatccgaacccatttcaaaaccttgtgtacctttcatagctccatttata 6118832  T
Q  519 atcaaaacatcaccggttggtaaaattaccatatcacccataattctcgcaaacggcatatcctccatttcccaaaccgggtcggatcccgttgccatta 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6118833 atcaaaacatcaccggttggtaaaattaccatatcacccataattctcgcaaacggcatatcctccatttcccaaaccgggtcggatcccgttgccatta 6118932  T
Q  619 tccgcccacaactcccatgcgccggaatatccgtattccgttcaagaaacgcaccgtattgagcaccgccacaaacaacacccaccgcctctgaaaattc 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6118933 tccgcccacaactcccatgcgccggaatatccgtattccgttcaagaaacgcaccgtattgagcaccgccacaaacaacaaccaccgcctctgaaaattc 6119032  T
Q  719 accttctaaagcaagcatcaccgaactccccgccgacggataatttctcggtccacccgttaactccgggtaaacccgaaccacacgattttcgttaaaa 818  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119033 accttctaaagccagcatcaccgaactccccgccgacggataatttctcggtccacccgttaactccgggtaaacccgaaccacacgattttcgttaaaa 6119132  T
Q  819 tcatacataatcgatttcgtgttcgcgaacacgaaaaggttaccgttaggaaggagatgaacatacgggtataaattatccatttgtgtatcttcagttt 918  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119133 tcatacataaccgatttcgtgttcgcgaacacgaaaagtttaccgttaggaaggagatgaacatacgggtataaattatccatttgtgtatcttcagttt 6119232  T
Q  919 cttgcagaaacggaaacaaaacgacaccattttcacgtttcgggtaaaattcaactgtgtttgaacctcttccaccgatgatgatg 1004  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119233 cttgtagaaacggaaacaaaacgacaccgttttcgcgtttcgggtaaaattcaactgtgtttgaacctcttccaccgatgatgatg 6119318  T

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