View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_30 (Length: 466)

Name: NF6131_low_30
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_30
NF6131_low_30
[»] scaffold0247 (1 HSPs)
scaffold0247 (18-456)||(19244-19682)
[»] chr2 (5 HSPs)
chr2 (383-452)||(19945705-19945774)
chr2 (383-456)||(13716691-13716764)
chr2 (383-452)||(27007227-27007296)
chr2 (391-456)||(35457454-35457519)
chr2 (395-456)||(37714477-37714538)
[»] chr6 (3 HSPs)
chr6 (361-448)||(34713563-34713650)
chr6 (289-341)||(22544043-22544095)
chr6 (362-456)||(2130452-2130546)
[»] chr8 (2 HSPs)
chr8 (362-447)||(25124433-25124518)
chr8 (289-359)||(15660870-15660940)
[»] chr5 (3 HSPs)
chr5 (383-452)||(3040241-3040310)
chr5 (383-452)||(30700851-30700920)
chr5 (393-456)||(25493873-25493936)
[»] scaffold0427 (1 HSPs)
scaffold0427 (289-359)||(11256-11326)
[»] chr7 (1 HSPs)
chr7 (383-452)||(46413724-46413793)
[»] chr4 (1 HSPs)
chr4 (383-452)||(42504175-42504244)
[»] chr3 (3 HSPs)
chr3 (383-452)||(26443007-26443076)
chr3 (361-447)||(10593420-10593506)
chr3 (363-452)||(18271924-18272013)
[»] chr1 (2 HSPs)
chr1 (361-452)||(35413084-35413175)
chr1 (383-456)||(26469998-26470071)
[»] scaffold0019 (1 HSPs)
scaffold0019 (286-332)||(176844-176890)
[»] scaffold0194 (1 HSPs)
scaffold0194 (361-434)||(27068-27141)


Alignment Details
Target: scaffold0247 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 19682 - 19244
Alignment:
Q  18 atacttttctttgattgttttttgtgatacgtccttttcattctttgccaccataaaggtactgtatgtatgtatttaatagatatgatttgcggaaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19682 atacttttctttgattgttttttgtgatacgtccttttcattctttgccaccataaaggtactgtatgtatgtatttaatagatatgatttgcggaaagt 19583  T
Q  118 gtcgaacgcgctcagccacagaagttaatttatttttattagcaaaaaattatatagaataaaaatactggtaaaagtttaagtactacgacccgcatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  19582 gtcgaacgcgctcagccacagaagttaatttatttttattagcaaaaaattatatagaatataaatactggtaaaagtgtaagtactacgacccgcatat 19483  T
Q  218 attgagacctactgacttagtaataatactagagaaggttcaagtaattaataatacatccctaagctatttagtgagattatataaggataactctact 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19482 attgagacctactgacttagtaataatactagagaaggttcaagtaattaataatacatccctaagctatttagtgagattatataaggataactctact 19383  T
Q  318 aagaaattagggttgtgcattcatgtcataagtttttccaaatggaaatgatagatattgtaatcaaatttattaagaaaattttaagtctgtgtatttg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19382 aagaaattagggttgtgcattcatgtcataagtttttccaaatggaaatgatagatattgtgatcaaatttattaagaaaattttaagtctgtgtatttg 19283  T
Q  418 ttaataccttttcttaacgacacaccattacctcctttg 456  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  19282 ttaatacctttttttaacgacacactattacctcctttg 19244  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 452
Target Start/End: Original strand, 19945705 - 19945774
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    |||||||| |||||||||||||| | ||||||||||||||| |||| |||||  ||||||||||||||||    
T  19945705 aaatttatcaagaaaattttaagacagtgtatttgttaatatctttccttaattacacaccattacctcc 19945774  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 456
Target Start/End: Original strand, 13716691 - 13716764
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcctttg 456  Q
    |||||||| |||||||||| ||  | ||||||||| ||| ||||||||||||  |||||| |||||||||||||    
T  13716691 aaatttatcaagaaaatttcaaaacagtgtatttgctaacaccttttcttaattacacactattacctcctttg 13716764  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 27007296 - 27007227
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    |||||||| |||||||||||||| | ||||||||||||| || ||| |||||  |||||| |||||||||    
T  27007296 aaatttatcaagaaaattttaagacagtgtatttgttaacacttttccttaaatacacactattacctcc 27007227  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 35457519 - 35457454
Alignment:
Q  391 taagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcctttg 456  Q
    |||||||||||||||   || |||||||||| || ||| |||||  ||||||||||||||||||||    
T  35457519 taagaaaattttaagatagtatatttgttaacacatttccttaattacacaccattacctcctttg 35457454  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 37714538 - 37714477
Alignment:
Q  395 aaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcctttg 456  Q
    ||||||||||| | ||||||||| ||| |||||| |||||  ||||||||||| ||||||||    
T  37714538 aaaattttaaggcagtgtatttgctaacacctttccttaattacacaccattatctcctttg 37714477  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 448
Target Start/End: Complemental strand, 34713650 - 34713563
Alignment:
Q  361 ggaaatgatagatattgtaatcaaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattac 448  Q
    ||||||||||||||  || |  |||||||| ||||||||||||||   ||||||||||||| ||||||||||||  ||||||||||||    
T  34713650 ggaaatgatagatacagtgacaaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcttaaatacacaccattac 34713563  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 22544095 - 22544043
Alignment:
Q  289 tagtgagattatataaggataactctactaagaaattagggttgtgcattcat 341  Q
    |||||||| |||||||||||||||||| |||||||||||| ||| ||||||||    
T  22544095 tagtgagactatataaggataactctagtaagaaattaggattgagcattcat 22544043  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 456
Target Start/End: Original strand, 2130452 - 2130546
Alignment:
Q  362 gaaatgatagatattgtaatcaaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcctttg 456  Q
    ||||||||||||||  | || |||||||| |||||||||| ||  | ||||||||| ||| |||||| |||||  |||||| || ||||||||||    
T  2130452 gaaatgatagatataatcataaaatttatcaagaaaatttcaaaacggtgtatttgctaacacctttccttaattacacacaatcacctcctttg 2130546  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 447
Target Start/End: Complemental strand, 25124518 - 25124433
Alignment:
Q  362 gaaatgatagatattgtaatcaaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccatta 447  Q
    |||||||||||||  || |  |||||||| |||||||||| ||| | ||||||||||||||||||||||||||  ||||| |||||    
T  25124518 gaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaataccttttcttaattacacatcatta 25124433  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 15660870 - 15660940
Alignment:
Q  289 tagtgagattatataaggataactctactaagaaattagggttgtgcattcatgtcataagtttttccaaa 359  Q
    |||||||| ||||||||||||||| || |||| || ||| |||| |||||||| ||||||||||| |||||    
T  15660870 tagtgagactatataaggataactttagtaagcaactagagttgagcattcatttcataagttttaccaaa 15660940  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 452
Target Start/End: Original strand, 3040241 - 3040310
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    |||||||| |||||||||||||| | ||||||||| ||| |||||| |||||  ||||||||||||||||    
T  3040241 aaatttatcaagaaaattttaagacagtgtatttgctaacacctttccttaattacacaccattacctcc 3040310  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 452
Target Start/End: Original strand, 30700851 - 30700920
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    |||||||| || ||||||||||| | ||||||||| ||| ||||||||||||  ||||| ||||||||||    
T  30700851 aaatttatcaaaaaaattttaagacagtgtatttgctaacaccttttcttaattacacaacattacctcc 30700920  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 25493936 - 25493873
Alignment:
Q  393 agaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcctttg 456  Q
    ||||||||| ||| | || ||||||||||||| ||| |||||  ||||||||||||||||||||    
T  25493936 agaaaatttcaagacagtatatttgttaatacatttccttaattacacaccattacctcctttg 25493873  T

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Target: scaffold0427 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 11326 - 11256
Alignment:
Q  289 tagtgagattatataaggataactctactaagaaattagggttgtgcattcatgtcataagtttttccaaa 359  Q
    |||||||| ||||||||||||||| || |||||||| ||||||   ||||||| ||||||||||| |||||    
T  11326 tagtgagactatataaggataactttagtaagaaataagggttacacattcatttcataagttttaccaaa 11256  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 452
Target Start/End: Original strand, 46413724 - 46413793
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    ||||||||||| ||||||| ||| | ||||||||||||| |||||| |||||  ||||| ||||||||||    
T  46413724 aaatttattaaaaaaatttcaagacagtgtatttgttaacacctttccttaattacacatcattacctcc 46413793  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 452
Target Start/End: Original strand, 42504175 - 42504244
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    |||| ||| |||||||||||||| | ||||||||||||| |||||| |||||  ||||| ||||||||||    
T  42504175 aaatgtatcaagaaaattttaagacagtgtatttgttaacacctttccttaattacacatcattacctcc 42504244  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 26443076 - 26443007
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    |||||||| |||||||||| ||| | ||||||||| ||| ||||||| ||||  ||||||||||||||||    
T  26443076 aaatttatcaagaaaatttcaagacagtgtatttggtaacaccttttgttaattacacaccattacctcc 26443007  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 447
Target Start/End: Original strand, 10593420 - 10593506
Alignment:
Q  361 ggaaatgatagatattgtaatcaaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccatta 447  Q
    ||||| ||||||||  || || |||||||| ||||||||||||||   ||||||||||||| |||||||| |||  | |||||||||    
T  10593420 ggaaaagatagatacagtgataaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcctaattatacaccatta 10593506  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 452
Target Start/End: Original strand, 18271924 - 18272013
Alignment:
Q  363 aaatgatagatattgtaatcaaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    ||||||||||||| || |  |||||||| ||||||||||||||   | ||||||| ||| ||||||  ||||  ||||||||||||||||    
T  18271924 aaatgatagatatagtgacaaaatttatcaagaaaattttaagatagagtatttgctaacacctttctttaattacacaccattacctcc 18272013  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 452
Target Start/End: Complemental strand, 35413175 - 35413084
Alignment:
Q  361 ggaaatgatagatattgtaatcaaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcc 452  Q
    |||||||||||||||  | |  |||||||| |||||||||| |||   ||||||||||||| |||||| |||||  |||||| |||||||||    
T  35413175 ggaaatgatagatataatgacaaaatttatcaagaaaatttcaagagagtgtatttgttaacacctttccttaattacacactattacctcc 35413084  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 456
Target Start/End: Complemental strand, 26470071 - 26469998
Alignment:
Q  383 aaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaacgacacaccattacctcctttg 456  Q
    |||||||| |||||||||||||  | ||||||||| ||| |||||| |||||  ||||||||||| || |||||    
T  26470071 aaatttatcaagaaaattttaaaacagtgtatttgctaacacctttccttaattacacaccattatcttctttg 26469998  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 176890 - 176844
Alignment:
Q  286 atttagtgagattatataaggataactctactaagaaattagggttg 332  Q
    ||||||||||| |||||| ||||||||||  ||||||||||||||||    
T  176890 atttagtgagactatatatggataactctggtaagaaattagggttg 176844  T

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Target: scaffold0194 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 27068 - 27141
Alignment:
Q  361 ggaaatgatagatattgtaatcaaatttattaagaaaattttaagtctgtgtatttgttaataccttttcttaa 434  Q
    ||||||||||||||  || |  |||||||| |||||||||| ||| | ||||||||||||| |||||| |||||    
T  27068 ggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaacacctttccttaa 27141  T

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