View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_31 (Length: 463)

Name: NF6131_low_31
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_31
NF6131_low_31
[»] chr1 (6 HSPs)
chr1 (1-457)||(33856955-33857416)
chr1 (1-457)||(33923507-33923968)
chr1 (89-359)||(47872396-47872674)
chr1 (89-206)||(49547324-49547446)
chr1 (249-279)||(44261733-44261763)
chr1 (409-445)||(47872307-47872343)
[»] chr3 (3 HSPs)
chr3 (404-445)||(14961558-14961599)
chr3 (58-96)||(487266-487304)
chr3 (55-87)||(14961823-14961855)
[»] chr5 (1 HSPs)
chr5 (221-273)||(31264611-31264663)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 33857416 - 33856955
Alignment:
Q  1 tagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagattcccaaggacataaaatgcatgaacccctatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33857416 tagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagtttcccaaggacataaaatgcatgaacccctatttt 33857317  T
Q  101 aataatccaaagatatagactttatcagttcattac---gtggaaaaattctatcatcaattagtttttcttc---aacaatgcagtgtgtcacaactta 194  Q
    |||| ||||||||||||||||| ||||||||||||    ||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  33857316 aatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttcaacaatgcagtgtgtcacaactta 33857217  T
Q  195 atccatcaattagtaacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaatgtcatacatacaact 294  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857216 atccatcaattagtttt-taatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaatgtcatacatacaact 33857118  T
Q  295 ggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaaccatggcatatatatatagcaagcnnnnnnnncgg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||    
T  33857117 ggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggtagaaccatggcatatatatatagcaagcaaaaaaaacgg 33857018  T
Q  395 cagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857017 cagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 33856955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 33923507 - 33923968
Alignment:
Q  1 tagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagattcccaaggacataaaatgcatgaacccctatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33923507 tagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagtttcccaaggacataaaatgcatgaacccctatttt 33923606  T
Q  101 aataatccaaagatatagactttatcagttcattac---gtggaaaaattctatcatcaattagtttttcttc---aacaatgcagtgtgtcacaactta 194  Q
    |||| ||||||||||||||||| ||||||||||||    ||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  33923607 aatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttcaacaatgcagtgtgtcacaactta 33923706  T
Q  195 atccatcaattagtaacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaatgtcatacatacaact 294  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923707 atccatcaattagtttt-taatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaatgtcatacatacaact 33923805  T
Q  295 ggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaaccatggcatatatatatagcaagcnnnnnnnncgg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||    
T  33923806 ggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggtagaaccatggcatatatatatagcaagcaaaaaaaacgg 33923905  T
Q  395 cagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923906 cagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 33923968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 89 - 359
Target Start/End: Complemental strand, 47872674 - 47872396
Alignment:
Q  89 aacccctattttaataatccaaagatatagactttatcagttcattacgtggaaaaattctatcatcaattagtttttcttcaacaatgcagtgtgtcac 188  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||| ||  ||| |||||||||| ||  ||  |||||||||||||||| |||||||    
T  47872674 aacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttctatcatcgat--gtagttcttcaacaatgcagagtgtcac 47872577  T
Q  189 aacttaatccatcaattagt----aacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaat----- 279  Q
    ||||||||||||||| | ||    ||  | |||||||||||||||||||||||||||| |    || ||||||||||||||| ||||| ||||||         
T  47872576 aacttaatccatcaaattgtgcaaaatttcatcaaattagtctctaaattaggactccattacacttaatccaacaaagattgaacaaattaaatatgcc 47872477  T
Q  280 -gtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaa 359  Q
      | ||| ||| |||| ||| |||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  47872476 acttatatatataactagagaactaatgttatgttggatggcgacaaaccaaaaatcatggcattacggcatatggtagaa 47872396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 49547324 - 49547446
Alignment:
Q  89 aacccctattttaataatccaaagatatagactttatcagttcattacgtggaaaaattctatcatca---attagttt--ttcttcaacaatgcagtgt 183  Q
    |||||||||||||||| |||||||||||| |||  || ||||||||||||| ||||||||||||||||   || |||||  |||| ||||| ||||| ||    
T  49547324 aacccctattttaatactccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagt 49547423  T
Q  184 gtcacaacttaatccatcaatta 206  Q
    | | |||||||||||||||||||    
T  49547424 gacccaacttaatccatcaatta 49547446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 279
Target Start/End: Original strand, 44261733 - 44261763
Alignment:
Q  249 ctcaatccaacaaagattaaacaatttaaat 279  Q
    |||||||||||||||||||||||||||||||    
T  44261733 ctcaatccaacaaagattaaacaatttaaat 44261763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 47872343 - 47872307
Alignment:
Q  409 catatgtgaagtgcaattaataatcataaactactaa 445  Q
    |||||| |||||||||| |||||||||||||||||||    
T  47872343 catatgagaagtgcaatgaataatcataaactactaa 47872307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 14961599 - 14961558
Alignment:
Q  404 ataaacatatgtgaagtgcaattaataatcataaactactaa 445  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  14961599 ataaacatatgtgaaatgcaatgaataatcataaactactaa 14961558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 487266 - 487304
Alignment:
Q  58 acattagattcccaaggacataaaatgcatgaaccccta 96  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  487266 acattagtttcccatggacataaaatgcatgaaccccta 487304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 14961855 - 14961823
Alignment:
Q  55 tggacattagattcccaaggacataaaatgcat 87  Q
    |||||||||| ||||||||||||||||||||||    
T  14961855 tggacattagtttcccaaggacataaaatgcat 14961823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 31264663 - 31264611
Alignment:
Q  221 ttagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaat 273  Q
    |||||||  ||||||||||||| | ||||||| ||||||||||||| ||||||    
T  31264663 ttagtcttaaaattaggactccatttgtctcattccaacaaagattgaacaat 31264611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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