View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_34 (Length: 440)

Name: NF6131_low_34
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_34
NF6131_low_34
[»] chr8 (16 HSPs)
chr8 (1-440)||(14637003-14637444)
chr8 (157-387)||(14629342-14629585)
chr8 (154-309)||(14629588-14629757)
chr8 (1-217)||(12889334-12889547)
chr8 (60-332)||(12078944-12079207)
chr8 (247-332)||(12889149-12889233)
chr8 (254-296)||(15617898-15617940)
chr8 (254-296)||(15629533-15629575)
chr8 (254-296)||(15641074-15641116)
chr8 (254-296)||(15653375-15653417)
chr8 (191-291)||(12062471-12062578)
chr8 (254-291)||(12067236-12067273)
chr8 (165-217)||(14640734-14640787)
chr8 (1-61)||(14640849-14640910)
chr8 (247-291)||(15970630-15970674)
chr8 (254-296)||(15609512-15609554)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 14637444 - 14637003
Alignment:
Q  1 ctgagaaagtgtttaagttcctcactgatcctacacaa-gatttaagggtcgctaactagttcaaaatgattgctcaaaaatgtatattagattttatgt 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14637444 ctgagaaagtgtttaagttcctcactgatcctacacaaagatttaagggtcgctaaatagttcaaaatgattgctcaaaaatgtatattagattttatgt 14637345  T
Q  100 ttatgtttactgtaataataccgaattctaggaatgaaattctagattttgaaatatgggaagtaaagtcagaagttcaaaaagatttctcaaaatttta 199  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14637344 ttatgtttattgtgataatatcgaattctaggaatgaaattctagattttgaaatatgggaagtaaagtcagaagttcaaaaggatttctcaaaatttta 14637245  T
Q  200 atctagattttatgtttagtttgaaattatcaaaatttaatgatgacattttgatatttattgatattgatcatgtctcaaattatcttttaaatagttt 299  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  14637244 atctagattttatgtttagtttgaaattatcaaattttaatgatgacattttgatatgtattgatattgatcatgtcttaaattatcttttaaatagttt 14637145  T
Q  300 tcaacccacttggattggtctgatgttgttgacgtgtgacgtgcttcttttaatgttgtcaatatcggtggctaatttggcatcttag-nnnnnnngaca 398  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        ||||    
T  14637144 tcgacccacttgggttggtctgatgttgttgacgtgtgacgtgcttcttttaatgttgtcaatttcggtggctaatttggcatcttagaaaaaaaagaca 14637045  T
Q  399 cttttaaacagtttatggttcattttatgaattcagattatg 440  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14637044 cttttaaacagtttatggttcattttatgaattcagattatg 14637003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 157 - 387
Target Start/End: Complemental strand, 14629585 - 14629342
Alignment:
Q  157 gggaagtaaagtcagaagttcaaaaagatttctcaaaattttaatctagattttatgttta------gtttgaaattatcaaaatttaatgatgacatt- 249  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||      |||||||||||||||| | |||||||| ||||     
T  14629585 gggaagttaagtcagaagttcaaaaagatttcgcaaaattttaatctagattttatgtttatgtttagtttgaaattatcaaattctaatgatggcattc 14629486  T
Q  250 ------ttgatatttattgatattgatcatgtctcaaattatcttttaaatagttttcaacccacttggattggtctgatgttgttgacgtgtgacgtgc 343  Q
          |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||| ||||    
T  14629485 tagattttgatatttattaatattgatcatgtctcatattatcttttaaatagtttccaacccacttgggttggtatgatgttgttgacttgtgatgtgc 14629386  T
Q  344 ttcttttaatgttgtcaatatcggtggctaatttggcatcttag 387  Q
    ||||||||||||||||| | | |||| |||||||||||||||||    
T  14629385 ttcttttaatgttgtcacttttggtgactaatttggcatcttag 14629342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 154 - 309
Target Start/End: Complemental strand, 14629757 - 14629588
Alignment:
Q  154 tatgggaagtaaagtcagaagttcaaaaagatttctcaaaattttaatctagattttatgttta-------gtttgaaattatcaaaatttaatgatgac 246  Q
    |||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||| | |||||||| |    
T  14629757 tatgggaagttaagtcggaagttcaaaaagatttcgcaaaattttaatctagattttatgtttaatgtttagtttgaaattatcaaattctaatgatggc 14629658  T
Q  247 att-------ttgatatttattgatattgatcatgtctcaaattatcttttaaatagttttcaacccact 309  Q
    |||       |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  14629657 attctagattttgatatttattgatattgatcatgtctcacattatcttttaaatagtttccaacccact 14629588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12889547 - 12889334
Alignment:
Q  1 ctgagaaagtgtttaagttcctcactgatcctacac-aagatttaagggtcgctaactagttcaaaatgattgctcaaaaatgtatattagattttatgt 99  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||| || ||  |||||||||||||||||||||| ||||||| ||||||||| |||    
T  12889547 ctgagaaagtgtttaagttcctcattgattctacacgaagatttaaggttcactggctagttcaaaatgattgctcaataatgtattttagattttgtgt 12889448  T
Q  100 ttatgtttactgtaataataccgaattctaggaatgaaattctagattttgaaatatgggaagtaaagtcagaagttcaaaaagatttctcaaaatttta 199  Q
    |||| | ||| ||||  ||| ||||||||  |||||| |||||||||||||| | || ||| || |||||||||||||||||  ||| ||| ||| ||||    
T  12889447 ttatatgtac-gtaaacatatcgaattct--gaatgacattctagattttgataaat-ggatgttaagtcagaagttcaaaagaattgctccaaaattta 12889352  T
Q  200 atctagattttatgttta 217  Q
    || ||||||| |||||||    
T  12889351 atatagatttcatgttta 12889334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 332
Target Start/End: Complemental strand, 12079207 - 12078944
Alignment:
Q  60 ttcaaaatgattgctcaaaaatgtatattagattttatgtttatgtttactgtaataataccgaattctaggaatgaaattctagattttgaaatatggg 159  Q
    |||||||| ||||||||||||| ||| ||||||||| ||||||||| || ||| | |||| |||||||||||||||| ||| |||||||| | ||  |||    
T  12079207 ttcaaaataattgctcaaaaatttattttagattttgtgtttatgtgtagtgtgaaaatatcgaattctaggaatgacattttagattttcatattcggg 12079108  T
Q  160 aagtaaagtcagaagttcaaaaagatttctcaaaattttaatctagattttatgtttagtttgaaattatcaaaatttaatgatgacatt------ttga 253  Q
    | || ||||||||||||||| |              |||||| ||||||| ||||||| |  ||||||||  || | || | ||||||||      ||||    
T  12079107 atgttaagtcagaagttcaagag-------------tttaatttagatttcatgtttaat--gaaattattgaattctagtaatgacattctagatttga 12079023  T
Q  254 tatttattgatattgatcatgtctcaaattatcttttaaatagttttcaacccacttggattggtctgatgttgttgac 332  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||| |  ||||| |||||||    
T  12079022 tatttattgattttgatcatgtctcaaattattttttaaatagttttctagccacttggattagattgatggtgttgac 12078944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 12889233 - 12889149
Alignment:
Q  247 attttgatatttattgatattgatcatgtctcaaattatcttttaaatagttttcaacccacttggattggtctgatgttgttgac 332  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||  ||| ||| |||| ||||| |||||||||||||    
T  12889233 attttgatatttattgataatgatcatgtctc-aattatcttttaaatagttgccaatccatttgggttggtatgatgttgttgac 12889149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 15617898 - 15617940
Alignment:
Q  254 tatttattgatattgatcatgtctcaaattatcttttaaatag 296  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  15617898 tatttattgatattgatcatgtttcaaattatcttttacatag 15617940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 15629533 - 15629575
Alignment:
Q  254 tatttattgatattgatcatgtctcaaattatcttttaaatag 296  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  15629533 tatttattgatattgatcatgtttcaaattatcttttacatag 15629575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 15641074 - 15641116
Alignment:
Q  254 tatttattgatattgatcatgtctcaaattatcttttaaatag 296  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  15641074 tatttattgatattgatcatgtttcaaattatcttttacatag 15641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 15653375 - 15653417
Alignment:
Q  254 tatttattgatattgatcatgtctcaaattatcttttaaatag 296  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  15653375 tatttattgatattgatcatgtttcaaattatcttttacatag 15653417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 12062578 - 12062471
Alignment:
Q  191 aaaattttaatctagattttatgtttagtttgaaattatcaaaatttaatgatgac-------attttgatatttattgatattgatcatgtctcaaatt 283  Q
    |||| |||||| ||||||||||||||||  |||||| |||||| |  | |||||||       |||| ||||||| |||||||||||||||| |||||||    
T  12062578 aaaaatttaatttagattttatgtttagggtgaaatcatcaaattaaagtgatgacgttcatgatttcgatatttgttgatattgatcatgtttcaaatt 12062479  T
Q  284 atctttta 291  Q
    ||||||||    
T  12062478 atctttta 12062471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 12067273 - 12067236
Alignment:
Q  254 tatttattgatattgatcatgtctcaaattatctttta 291  Q
    |||||||||||||||||||||| |||||||||||||||    
T  12067273 tatttattgatattgatcatgtttcaaattatctttta 12067236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 14640787 - 14640734
Alignment:
Q  165 aagtcagaagttcaaaaagatttctc-aaaattttaatctagattttatgttta 217  Q
    |||||||||||||||||||||| ||| |||| |||||| |||||||||||||||    
T  14640787 aagtcagaagttcaaaaagattgctcaaaaaatttaatttagattttatgttta 14640734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14640910 - 14640849
Alignment:
Q  1 ctgagaaagtgtttaagttcctcactgatcctacac-aagatttaagggtcgctaactagtt 61  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||||| || ||| ||||||    
T  14640910 ctgagaaagtgtttaagttcctcactaatcctactcaaagatttaaggttcactagctagtt 14640849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 15970674 - 15970630
Alignment:
Q  247 attttgatatttattgatattgatcatgtctcaaattatctttta 291  Q
    ||||||| |||||||||||||| |||||| |||||||||||||||    
T  15970674 attttgaaatttattgatattgttcatgtttcaaattatctttta 15970630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 15609512 - 15609554
Alignment:
Q  254 tatttattgatattgatcatgtctcaaattatcttttaaatag 296  Q
    |||||||||||||||||||||| | ||||||||||||| ||||    
T  15609512 tatttattgatattgatcatgttttaaattatcttttacatag 15609554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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