View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_35 (Length: 439)
Name: NF6131_low_35
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 5 - 423
Target Start/End: Complemental strand, 12096015 - 12095597
Alignment:
| Q |
5 |
tgtctaacaatatgttatccggaccaatcccaagatcgttgggcacagttaatttcagtatcttcgaggctgctgggaaccagttgaccggtgatgcgtc |
104 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12096015 |
tgtccaacaacatgttatccggaccaatcccaagatcgttgggcaaagttaatttcagtattttcgaggctgctgggaaccagttgaccggtgatgcgtc |
12095916 |
T |
|
| Q |
105 |
tttcttgttcggggaaagtaagactgagttggctcatctggacttgtcgcaaaacaagttgtcgttcgacctctctaaggtggtaatgccagtgggacaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12095915 |
tttcttgttcggggaaagtaagactgagttggctcatctggacttgtcgcgaaacaagttgtcattcgacctctctaaggtggtaatgccagtgggacaa |
12095816 |
T |
|
| Q |
205 |
ctggactcgaatttgctggtcttacggttggaaaataacatgatatacggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatg |
304 |
Q |
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| T |
12095815 |
ctggaatcgaatttgcttgtcttacggttggaaaataacatgatatacggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatg |
12095716 |
T |
|
| Q |
305 |
tgagctacaaccagctttccggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcattttcgcataataagggcttgtgtggttc |
404 |
Q |
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| T |
12095715 |
tgagctacaaccagcttttcggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcgttttcgcataataagggcttgtgtggttc |
12095616 |
T |
|
| Q |
405 |
tcctttgcctccttgtaag |
423 |
Q |
| |
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| T |
12095615 |
tcctttgcctccttgtaag |
12095597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 426
Target Start/End: Complemental strand, 12079375 - 12078954
Alignment:
| Q |
5 |
tgtctaacaatatgttatccggaccaatcccaagatcgttgggcacagttaatttcagtatcttcgaggctgctgggaaccagttgaccggtgatgcgtc |
104 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |
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| T |
12079375 |
tgtccaacaacatgttatccggaccaatcccaagatcgttgggcacagttaatttcagtattttcgaggctgctgggaaccggttgaccggtgatgcatc |
12079276 |
T |
|
| Q |
105 |
tttcttgttcggggaaagtaagactgagttggctcatctggacttgtcgcaaaacaagttgtcgttcgacctctctaaggtggtaatgccagtgggacaa |
204 |
Q |
| |
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|||||||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||||| |
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| T |
12079275 |
gttcttgttcgggaaagataagactgagttggctcacctggacttgtcgcgaaacaagctgtcgtttgacctcggtaaggtggtaatgccagtgggacaa |
12079176 |
T |
|
| Q |
205 |
ctggactcgaatttgctggtcttacggttggaaaataacatgatatacggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatg |
304 |
Q |
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||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12079175 |
ctggactcgaatttgctggtcttgcggttggaaaataaccttatatatggaaagttgccagcttggttaggccaagcgtcattgttgtatgacttcaatg |
12079076 |
T |
|
| Q |
305 |
tgagctacaaccagctttccggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcattttcgcataataagggcttgtgtggttc |
404 |
Q |
| |
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||||| ||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
12079075 |
tgagcaacaaccaactttgtggtcctataccgacagtcggagggaagttgcaagggtttgatccatcgtcgttttcgcataataagtgtttgtgtggttc |
12078976 |
T |
|
| Q |
405 |
tcctttgcctccttgtaagtga |
426 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
12078975 |
tcctttgcccccttgtaagtga |
12078954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 1249176 - 1249247
Alignment:
| Q |
302 |
atgtgagctacaaccagctttccggtcctataccgacagttggagggaagttgcaagagtttgatccatcgt |
373 |
Q |
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|||||||| |||||||||||| ||||||||||| | | ||||||||||||||||| ||||||||| |||| |
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| T |
1249176 |
atgtgagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgt |
1249247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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