View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_37 (Length: 436)
Name: NF6131_low_37
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 2764871 - 2764453
Alignment:
| Q |
18 |
gattgaatatgaaaatgaaaaagataataaagataaacaacttaactaactctaaactaactattaaccaactttattttcaatatcaggtaccgaccaa |
117 |
Q |
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| T |
2764871 |
gattgaatatgaaaatgaaaaagatcataaagatacacaacttaactaactctaaactaactattaaccaactttattttcaatatcaggtaccgaccaa |
2764772 |
T |
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| Q |
118 |
gataccctccacacatgaacacgagaatctcacaagctgatgtagtacaccccgatgaaatggatgaggaatttgatacttttccaacaagcaaaaatcc |
217 |
Q |
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| T |
2764771 |
gataccctccacacatgaacacaagaatctcacaagctgatgtagtacaccccgatgaaatggatgaggaatttgatacttttccaacaagcaaaaatcc |
2764672 |
T |
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| Q |
218 |
cgaccttgtaagaatgcggtatgatcgtttgaggagtgtggctggtagaatacaaacggttgtaggtgatttggctagccagggtgagaggattcatgca |
317 |
Q |
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| T |
2764671 |
cgaccttgtaagaatgcggtatgatcgtttgaggagtgtggctggtagaatacaaaccgttgtaggtgatttggctagccagggtgagaggattcatgca |
2764572 |
T |
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| Q |
318 |
ctgttgagctggagagatccgcgtgctacttctttattcattactttctgtttgttagctgctttggtgttatatgttactccttttcaaatggtggctg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2764571 |
ctgttgagctggagagatccgcgtgctacttctttattcattactttctgtttgttagctgctttggtgttatatgttactccttttcaaatggtggctg |
2764472 |
T |
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| Q |
418 |
gtttagcaggtttctattt |
436 |
Q |
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| T |
2764471 |
gtttagcaggtttctattt |
2764453 |
T |
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