View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_38 (Length: 435)
Name: NF6131_low_38
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 7210875 - 7210605
Alignment:
| Q |
17 |
caaatatgttatgcatttaatttaatttatgtgttacattacaaatgcatttttaggagtgtgacttaccaaggtaaactgtcaaagatttgaagaagcc |
116 |
Q |
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| T |
7210875 |
caaatatgttatgcatttaatttaatttatgtgttacattacaaatgcatttttaggagtgtgacttaccaaggtaaactgtgaaagatttgaagaagcc |
7210776 |
T |
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| Q |
117 |
atgaaaggagaagaatcaaaacaagtgcatgaaacaaacagttagtatattctcttttaaaacaagagaggaaagaaaagaaggattgaaaatagaaaag |
216 |
Q |
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| T |
7210775 |
atgaaaggagaagaatcaaa-caagtgcatgaaacaaacagttagtatattctcttttaaaacaagagaggaaagaaaagaaagattgaaaatagaaaag |
7210677 |
T |
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| Q |
217 |
atgttagaggactagtttggttcttgaaaatagttacaaaacatgcttccttagtcaatgacaacataaacc |
288 |
Q |
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| T |
7210676 |
aggttagaggactagtttggttcttgaaaatagttacaaaacatgcttccttagtcaatgacaacataaacc |
7210605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 323 - 424
Target Start/End: Complemental strand, 7210562 - 7210461
Alignment:
| Q |
323 |
ttgaaacaaaatcaaaagtgtatgtcatgtttctcttaccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttc |
422 |
Q |
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| T |
7210562 |
ttgaaacaaaatcaaaagtgtatgtcatgtttctcttaccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttc |
7210463 |
T |
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| Q |
423 |
at |
424 |
Q |
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|| |
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| T |
7210462 |
at |
7210461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 4846977 - 4847041
Alignment:
| Q |
360 |
accttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcat |
424 |
Q |
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| T |
4846977 |
accttgtcttcctttccttgtttgcccttccttcttgcaactgttatcccataaatgtgcttcat |
4847041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 47753161 - 47753097
Alignment:
| Q |
360 |
accttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcat |
424 |
Q |
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| T |
47753161 |
accttgtcttccttttcttgtttgtccttccttcttgcaactgttatcccataaatgtgcttcat |
47753097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 53235921 - 53235986
Alignment:
| Q |
359 |
taccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcat |
424 |
Q |
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| T |
53235921 |
taccttgtcttcctttcctactttgtccttcccttctgcaactattgtcccatagatgtgcttcat |
53235986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 40189559 - 40189491
Alignment:
| Q |
356 |
tcttaccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcat |
424 |
Q |
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| T |
40189559 |
tcttaccttgtcttccttttctgctttggccttctttcttgcaactgttgtcccataaatgagcttcat |
40189491 |
T |
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