View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_4 (Length: 897)

Name: NF6131_low_4
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_4
NF6131_low_4
[»] chr8 (12 HSPs)
chr8 (501-703)||(2931067-2931269)
chr8 (501-703)||(3011498-3011700)
chr8 (501-704)||(37796567-37796770)
chr8 (501-672)||(2947751-2947922)
chr8 (501-704)||(2921718-2921921)
chr8 (700-779)||(2930955-2931030)
chr8 (781-853)||(2930760-2930831)
chr8 (734-778)||(2947603-2947647)
chr8 (450-498)||(2931991-2932038)
chr8 (703-778)||(3011740-3011814)
chr8 (734-779)||(2921578-2921623)
chr8 (786-853)||(3011944-3012010)
[»] chr6 (2 HSPs)
chr6 (501-705)||(4915561-4915765)
chr6 (734-778)||(4915830-4915874)
[»] chr3 (1 HSPs)
chr3 (501-703)||(1505813-1506015)
[»] chr2 (1 HSPs)
chr2 (501-704)||(28025565-28025768)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 2e-67; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 501 - 703
Target Start/End: Complemental strand, 2931269 - 2931067
Alignment:
Q  501 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 600  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  2931269 ttctatggagagagaataaatgagtacaaagaggaattgaaaacaattggagttatgttcaattgtgaggaagcatgtgaatttattggaaaagaactaa 2931170  T
Q  601 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 700  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||  |||||||| |||| | ||| ||| | ||||||||||||||    
T  2931169 tgtctcgtgctgcttctttctcattaagtaggagtcatgttcttttgattcttaacttcgtccaatatatccggacaaaccttcttcctttggacaattt 2931070  T
Q  701 tgt 703  Q
    |||    
T  2931069 tgt 2931067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 501 - 703
Target Start/End: Original strand, 3011498 - 3011700
Alignment:
Q  501 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 600  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| || |    
T  3011498 ttctatggggatagaataaatgaatacaaagaggagttgaaaacaattggagtgatgttcaattgtgaggaagcatgtggattcattggaagagagctca 3011597  T
Q  601 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 700  Q
    |||| ||||| ||||| |||||  |||| || ||| |||||||||||||||||||||| ||||||||||||   |||| |||| | ||||||||||||||    
T  3011598 tgtctcgtgcagcttcattctcactaagcaggagtgatgttcttttgatgcttaacttcatccaatatctcaagaaaagtcttcttcctttggacaattt 3011697  T
Q  701 tgt 703  Q
    |||    
T  3011698 tgt 3011700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 501 - 704
Target Start/End: Complemental strand, 37796770 - 37796567
Alignment:
Q  501 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 600  Q
    ||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||| |||||| |    
T  37796770 ttctatggggatagaataaacaagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgtaaattcattggaagagaactga 37796671  T
Q  601 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 700  Q
    |||| || ||  |||| ||| |||||||||  | |||||| |||||||||||||| || |||||||||||| | | || |||| | || |||||||| ||    
T  37796670 tgtctcgcgcatcttccttcactttaagtaagaatcatgtccttttgatgcttaaattcatccaatatctcaggagaagtcttctcccattggacaaatt 37796571  T
Q  701 tgtg 704  Q
    ||||    
T  37796570 tgtg 37796567  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 501 - 672
Target Start/End: Complemental strand, 2947922 - 2947751
Alignment:
Q  501 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 600  Q
    ||||||||||| |||||||||| ||||||||| ||||| |||| | ||||||||| |||  | |||| | ||| |||| | |||||||||| ||| ||||    
T  2947922 ttctatggggaaagaataaatgcgtacaaagaagagttaaaaagagttggagtgaggtttgagtgtgtggaagtatgttatttcattggaagagagctaa 2947823  T
Q  601 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctcc 672  Q
    |||| ||||| ||||||||||||||||  || |  |||||||||| |||||||||||| |||||||||||||    
T  2947822 tgtctcgtgcggcttctttctctttaaccaggaaccatgttctttggatgcttaacttcatccaatatctcc 2947751  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 501 - 704
Target Start/End: Complemental strand, 2921921 - 2921718
Alignment:
Q  501 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 600  Q
    ||||| ||||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||||||| |||||||  | ||||| ||||| ||||| |    
T  2921921 ttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgcaatttcatcggaaaggaactta 2921822  T
Q  601 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 700  Q
    |||| | |||  |||  | | ||||||| |  | ||||||| |||| ||||||||||| |||||||||||| | |||| |||| | ||| ||||||| ||    
T  2921821 tgtctcatgcatctttctccgctttaagcaagaatcatgttattttaatgcttaacttcatccaatatctcagtaaaagtcttcttcctctggacaaatt 2921722  T
Q  701 tgtg 704  Q
    ||||    
T  2921721 tgtg 2921718  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 700 - 779
Target Start/End: Complemental strand, 2931030 - 2930955
Alignment:
Q  700 ttgtggtcttaagtcttctgtgggatcggtattaattgaatgattcaggatggcaagttgcatcacaaattagtgatatc 779  Q
    ||||||||||| | || ||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||    
T  2931030 ttgtggtcttaggcctcctgtgggatcggtatt----gaatgactcaggatggcaagttgcatcacaaattagtgatatc 2930955  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 781 - 853
Target Start/End: Complemental strand, 2930831 - 2930760
Alignment:
Q  781 ccttaaaatttggcctcattgaccactgaggctgatgtttttgataatggaatgcataagacacttgaatgcc 853  Q
    |||| ||||||||| ||||||||| ||||||||| | |||| ||||||||||||||| |||||||||||||||    
T  2930831 ccttcaaatttggcttcattgaccgctgaggctgttctttt-gataatggaatgcatcagacacttgaatgcc 2930760  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 734 - 778
Target Start/End: Complemental strand, 2947647 - 2947603
Alignment:
Q  734 attgaatgattcaggatggcaagttgcatcacaaattagtgatat 778  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  2947647 attgaatgattccggatggcaagttgcatcacaaattagtgatat 2947603  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 2932038 - 2931991
Alignment:
Q  450 gaacaaaacatttggatggtgcagcaaaccagttttttatgccagaaag 498  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  2932038 gaacaaaacatttagatg-tgcagcaaaccagttttttatgccagaaag 2931991  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 703 - 778
Target Start/End: Original strand, 3011740 - 3011814
Alignment:
Q  703 tggtcttaagtcttctgtgggatcggtattaattgaatgattcaggatggcaagttg---catcacaaattagtgatat 778  Q
    |||||||| |||| ||||||||||||||||    ||||||||| |||||||||||||   |||||||||||||||||||    
T  3011740 tggtcttaggtctcctgtgggatcggtatt----gaatgattccggatggcaagttgtatcatcacaaattagtgatat 3011814  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 734 - 779
Target Start/End: Complemental strand, 2921623 - 2921578
Alignment:
Q  734 attgaatgattcaggatggcaagttgcatcacaaattagtgatatc 779  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||||    
T  2921623 attgaatgattccggatggcaagttgcatcccaaattagtaatatc 2921578  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 786 - 853
Target Start/End: Original strand, 3011944 - 3012010
Alignment:
Q  786 aaatttggcctcattgaccactgaggctgatgtttttgataatggaatgcataagacacttgaatgcc 853  Q
    |||||||||||| |||||  ||||||||| | |||| ||||||||| ||||| |||||||||||||||    
T  3011944 aaatttggcctctttgacagctgaggctgttctttt-gataatggagtgcatcagacacttgaatgcc 3012010  T

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Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 501 - 705
Target Start/End: Original strand, 4915561 - 4915765
Alignment:
Q  501 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 600  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||| |||||||| ||||| ||||    
T  4915561 ttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaa 4915660  T
Q  601 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 700  Q
    |||  ||||| |||||| |||||||||| |  |||||||||||||||||||||||||  |||||||||||| | |||| |||| | ||||| ||||| ||    
T  4915661 tgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgatgcttaactccatccaatatctcaggaaaagtcttcttcctttcgacaaatt 4915760  T
Q  701 tgtgg 705  Q
    |||||    
T  4915761 tgtgg 4915765  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 734 - 778
Target Start/End: Original strand, 4915830 - 4915874
Alignment:
Q  734 attgaatgattcaggatggcaagttgcatcacaaattagtgatat 778  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||    
T  4915830 attgaatggttcagaatggcaagttgcatcacagattagtgatat 4915874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 501 - 703
Target Start/End: Original strand, 1505813 - 1506015
Alignment:
Q  501 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 600  Q
    ||||| ||| |||||||||||||||||| ||| |||||||||| | | ||||| ||||||| || |||| |||||||||| ||||||| || ||||||||    
T  1505813 ttctacgggaatagaataaatgagtacacagaagagttgaaaatagtcggagttatgttcagttatgaggaagcatgtgacttcattgcaagagaactaa 1505912  T
Q  601 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 700  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||  | ||||  ||| | ||||||||||| ||    
T  1505913 tgtctcgtgctgcttctttctctttaagaggaagtcatgttcttttgatgcttaacttcatccaatatcttaggaaaagccttcttcctttggacaactt 1506012  T
Q  701 tgt 703  Q
    |||    
T  1506013 tgt 1506015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 501 - 704
Target Start/End: Complemental strand, 28025768 - 28025565
Alignment:
Q  501 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 600  Q
    ||||||||||||||||||||  ||||  |||| |||||||||||  | |||||||||| || ||||||| |||||||    |||||||||| |||||| |    
T  28025768 ttctatggggatagaataaacaagtatgaagaagagttgaaaactgtaggagtgatgtccagttgtgaggaagcatgcagtttcattggaagagaactga 28025669  T
Q  601 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 700  Q
    |||| |||||  ||||  |  || |||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| | || |||||||| ||    
T  28025668 tgtctcgtgcatcttccgttactctaagtaaaaatcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttctcccgttggacaaatt 28025569  T
Q  701 tgtg 704  Q
    ||||    
T  28025568 tgtg 28025565  T

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