View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_41 (Length: 420)
Name: NF6131_low_41
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Original strand, 41135101 - 41135489
Alignment:
| Q |
11 |
cagagacataattaaccctaaatttaatgtattatttagtacagtagaaatagaagaagagagaaatnnnnnnnnnnntgttgttgtgttgaaaagtata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
41135101 |
cagagacataattaaccctaaatttaatgtattatttagtacaatagaaatagaagaagagagaaataaaaaaaaa--tgttgttgtgttgaacagtata |
41135198 |
T |
|
| Q |
111 |
aaaatatcctttgaattaaatgcacactcgataaaacttattatttaatattaagtttatctaattaacccaatgagttcatctaccttcatgttgctta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41135199 |
aaaatatcctttgaattaaatgcacactcgataaaacttattatttaatattaagtttatctaattaacccaatgagttcatctaccttcatgttgctta |
41135298 |
T |
|
| Q |
211 |
agtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttcttaaccagtttttcttctgacatcgtttctcc |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41135299 |
agtttttggcttcctcaattgttgtgactttcatgccatacttcttaagtaaagatattaggattttcttaaccagtttttcttctgacatcgtttctcc |
41135398 |
T |
|
| Q |
311 |
caaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcattctaaggttttcatacttg |
401 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41135399 |
caaggcacggaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcattctaaggttttcatacttg |
41135489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 382
Target Start/End: Original strand, 22978989 - 22979153
Alignment:
| Q |
218 |
ggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttcttaaccagtttttcttctgacatcgtttctcccaaggca |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||| || | ||||| | || ||| | |||||||| ||||||| || || ||||||||| ||||| | || ||| |
|
|
| T |
22978989 |
ggcttcctcaatggttgtgactttcatgtcaaatctcttgggcaaagatgtaaggatttttctaaccagcttctcatctgacatcttttcttctaaagca |
22979088 |
T |
|
| Q |
318 |
cagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcat |
382 |
Q |
| |
|
| | ||||||||||| | | |||| |||| ||||| ||||| |||| ||||| ||| ||||| |
|
|
| T |
22979089 |
cttgatgtattagcaatttcaagaatattcatatgaaattcatgtatggattcataatctttcat |
22979153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 180 - 395
Target Start/End: Original strand, 17402124 - 17402338
Alignment:
| Q |
180 |
ccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttct |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | |||||||| |||| || |||||||||| |||| ||||| ||||||||| |||| |||||| |
|
|
| T |
17402124 |
ccaatgagttcatctaccttcatgttgcttatgtcttgggcttccttaattttta-gactttcatgtcatatttcttaagtaaggatcttagaattttcc |
17402222 |
T |
|
| Q |
280 |
taaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcatt |
379 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| | |||||| |||||| | |||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
17402223 |
taaccagtttttcttttaacatcgtttctcccaaggcacgtgatgtattaacaatatcaaggatactcatgtgaaagttatgaatggtttcatcataatt |
17402322 |
T |
|
| Q |
380 |
cattctaaggttttca |
395 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17402323 |
cattctaaggttttca |
17402338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 23317236 - 23317104
Alignment:
| Q |
178 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
277 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| || | ||||||| ||| |||||||||||||| ||||||||||| |||||||| | |||||||| |
|
|
| T |
23317236 |
acccaatgacttcatttaccttcatgttgcttatgtcttaggcttccgtaatgattgtgactttcatgtcatacttcttgggtaaggatctgaggatttt |
23317137 |
T |
|
| Q |
278 |
cttaaccagtttttcttctgacatcgtttctcc |
310 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |
|
|
| T |
23317136 |
tctaactagtttttcttctgacatcttttctcc |
23317104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 382
Target Start/End: Original strand, 19563594 - 19563798
Alignment:
| Q |
178 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
277 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | || | |||||||||||| ||||||||||||||| || | ||||| || ||||| |||||||| |
|
|
| T |
19563594 |
acccaattagttcatccaccttcatgttgctaatgtcttgggcttcctcaatggttgtgactttcatgtcaaatctcttggacaaagatatgaggatttt |
19563693 |
T |
|
| Q |
278 |
cttaaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatca |
377 |
Q |
| |
|
||||||| || |||| || |||| ||||||| || |||| | ||||||||||| | | |||||| |||||||| ||||| |||| ||||| ||| |
|
|
| T |
19563694 |
tctaaccagcttctcttttggcatcctttctcctaacgcacttcatgtattagcaatgtcaagaatactaatgtgaaaatcatgtatggattcataatct |
19563793 |
T |
|
| Q |
378 |
ttcat |
382 |
Q |
| |
|
||||| |
|
|
| T |
19563794 |
ttcat |
19563798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 375
Target Start/End: Complemental strand, 6096047 - 6095850
Alignment:
| Q |
178 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
277 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| || | |||||| ||||| |||||||||||||| || |||||||| ||| ||| | | | |
|
|
| T |
6096047 |
acccaataagttcatccaccttcatgttgcttatgtcttgggcttcttcaatggttgtgactttcatatcaaacttcttgggtagagatctgaaaaaaaa |
6095948 |
T |
|
| Q |
278 |
cttaaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcat |
375 |
Q |
| |
|
|||| ||| || | | | |||||| ||||||||||||||| | ||||||||||||| | ||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
6095947 |
tttaatcagcttctttccagacatcctttctcccaaggcacttgatgtattagcaatatcaagaattctcatgtgaaattcatgaatggattcatcat |
6095850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 307
Target Start/End: Original strand, 9296892 - 9297021
Alignment:
| Q |
178 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
277 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | || | | |||||||||| | ||||||||||||| || | ||||| | || ||| | |||||||| |
|
|
| T |
9296892 |
acccaattagttcatccaccttcatgttgctaatgtcttggtcttcctcaatggctgtgactttcatgtcaaatctcttgggcaaagatctgaggatttt |
9296991 |
T |
|
| Q |
278 |
cttaaccagtttttcttctgacatcgtttc |
307 |
Q |
| |
|
||||||| || || ||||||||| |||| |
|
|
| T |
9296992 |
tctaaccagcttctcgtctgacatcttttc |
9297021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University