View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_47 (Length: 394)
Name: NF6131_low_47
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 3 - 371
Target Start/End: Complemental strand, 49642974 - 49642606
Alignment:
| Q |
3 |
caaaggcagcgtagtaaggaagataaacggcgttagcggttttaggatcttccgttaagcatggatattctaacatacgacgatggaaaatgagttcaag |
102 |
Q |
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| T |
49642974 |
caaaggcagcgtagtaaggaagataaacggcgttagcggttttaggatcttccgttaagcatggatattctaacatacgacgatggaaaatgagttcaag |
49642875 |
T |
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| Q |
103 |
catggatgggtcggttcggtaccaactatgggaacggttatgggttttttgacccaaaccatggtttgctaagtaaggacataaatcgtctaggaatgtg |
202 |
Q |
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| T |
49642874 |
catggatgggtcggttcggtaccaactatgggaacggttatgggttttttgacccaaaccatggtttgctaagtaaggacataaatcgtctaggaatgtg |
49642775 |
T |
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| Q |
203 |
tattctgaacaatttgagagtagatctaggttgaattttggtggtaattttcttatgtggatccaacgttgttcgcactcattttctgttgttgttgatt |
302 |
Q |
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| T |
49642774 |
tattctgaacaatttgagagtagatctaggttgaattttggtggtaattttcttatgtggatccaacgttgttcgcactcattttctgttgttgttgatt |
49642675 |
T |
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| Q |
303 |
taaggtttttattttcttcggatttggttggattcaagaggaggaggaagatagtgatgatggagatgt |
371 |
Q |
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| T |
49642674 |
taaggtttttattttcttcggatttggttggattcaagaggaggaggaagatagtgatgatggagatgt |
49642606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 6623170 - 6623275
Alignment:
| Q |
47 |
ggatcttccgttaagcatgg--atattct-aacatacgacgatggaaaatgagttcaagcatggatgggtcggttcggtaccaactatgggaacggttat |
143 |
Q |
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| T |
6623170 |
ggatcttttgttaagcatggggatattcttaacatacggggattgaatatgagttcaagcatgtatgggtcgatt-tgtgtcaactatgggaactgttat |
6623268 |
T |
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| Q |
144 |
gggtttt |
150 |
Q |
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||||||| |
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| T |
6623269 |
gggtttt |
6623275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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