View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_48 (Length: 394)
Name: NF6131_low_48
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 42918033 - 42917671
Alignment:
| Q |
14 |
tactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42918033 |
tactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggatagtgtcatactcttcaaatgacttttgaactgcatccaca |
42917934 |
T |
|
| Q |
114 |
agatcatcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917933 |
agatcatcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggtt |
42917834 |
T |
|
| Q |
214 |
gacgcaccaaacgaatatcaaatccattttgtgaggctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917833 |
gacgcaccaaacgaatatcaaatccattttgtgaggctacacaacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaa |
42917734 |
T |
|
| Q |
314 |
tattggttgacccctttcttcaattggccatagttccatcatggaaggtacaacttgctcaag |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42917733 |
tattggttgacccctttcttcaattggccatagttccatcatggaaggtacaacttgctcaag |
42917671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 317
Target Start/End: Original strand, 11166838 - 11166972
Alignment:
| Q |
183 |
aaaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatccattttgtgaggctacacgacgaaaatcttgatcttcagaatcaa |
282 |
Q |
| |
|
|||| ||||||||| |||||||||| || |||| || | ||||||||||||||||||||||| ||| | | || |||||||| ||| ||| || || |
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|
| T |
11166838 |
aaaatatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtgaagctgctctacaaaaatcttcatcatcacaactaa |
11166937 |
T |
|
| Q |
283 |
tgtgtgtttttgcattgtcttgttgaataaatatt |
317 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |
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|
| T |
11166938 |
tgtgagttcttgcattgtcttgttgaataaatatt |
11166972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 23254923 - 23254561
Alignment:
| Q |
14 |
tactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23254923 |
tactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggatagtgtcatactcttcaaatgacttttgaactgcatccaca |
23254824 |
T |
|
| Q |
114 |
agatcatcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
23254823 |
agatcatcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatcttaaacatttaaatcaggagagtttggtggtt |
23254724 |
T |
|
| Q |
214 |
gacgcaccaaacgaatatcaaatccattttgtgaggctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23254723 |
gacgcaccaaacgaatatcaaatccattttgtgaggctacacaacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaa |
23254624 |
T |
|
| Q |
314 |
tattggttgacccctttcttcaattggccatagttccatcatggaaggtacaacttgctcaag |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23254623 |
tattggttgacccctttcttcaattggccatagttccatcatggaaggtacaacttgctcaag |
23254561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 36913358 - 36913659
Alignment:
| Q |
16 |
ctttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccacaag |
115 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||| || | | ||| ||||||||||| || ||| |||| |||||| |
|
|
| T |
36913358 |
ctttcatgatttcaatcatacacaattgcaaacttaaaaatatacgatttgagagcaccaccgaatattcttcaaatgatttcacaaccgcattcacaag |
36913457 |
T |
|
| Q |
116 |
atcatcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttga |
215 |
Q |
| |
|
|| |||||||| ||||| | |||||| |||||||| | ||||| | || || || |||||||| |||| ||||||||| |||||||||| || ||| |
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|
| T |
36913458 |
ctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatagctctgaaaaatccaagatccaaaatatttaaatctggagagtttgcaggctga |
36913557 |
T |
|
| Q |
216 |
cgcaccaaacgaatatcaaatccattttgtgaggctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaata |
315 |
Q |
| |
|
| || | ||||||||||||||||||||||| ||| | | || |||||||| ||| ||| || |||||| ||| |||||||||||||||||||||||| |
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|
| T |
36913558 |
cacattagtcgaatatcaaatccattttgtgaagctgctctacaaaaatcttcatcatcacaactaatgtgagttcttgcattgtcttgttgaataaata |
36913657 |
T |
|
| Q |
316 |
tt |
317 |
Q |
| |
|
|| |
|
|
| T |
36913658 |
tt |
36913659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 53535843 - 53535481
Alignment:
| Q |
14 |
tactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53535843 |
tactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggatagtgtcatactcttcaaatgacttttgaactgcatccaca |
53535744 |
T |
|
| Q |
114 |
agatcatcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53535743 |
agatcatcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatcttaaacatttaaatcaggagagtttggtggtt |
53535644 |
T |
|
| Q |
214 |
gacgcaccaaacgaatatcaaatccattttgtgaggctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53535643 |
gacgcaccaaacgaatatcaaatccattttgtgaggctacacaacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaa |
53535544 |
T |
|
| Q |
314 |
tattggttgacccctttcttcaattggccatagttccatcatggaaggtacaacttgctcaag |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53535543 |
tattggttgacccctttcttcaattggccatagttccatcatggaaggtacaacttgctcaag |
53535481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 319
Target Start/End: Original strand, 30460818 - 30460962
Alignment:
| Q |
175 |
caagatctaaaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatccattttgtgaggctacacgacgaaaatcttgatcttc |
274 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||| ||||||| || |||||||| ||||||||| |||| | || | || |||||||| | ||| || |
|
|
| T |
30460818 |
caagatctaaaatatttaaatctggagaatttgccggttgacacattaaacgaatgtcaaatccactttgcaatgcggctcggcgaaaatcctcatcatc |
30460917 |
T |
|
| Q |
275 |
agaatcaatgtgtgtttttgcattgtcttgttgaataaatattgg |
319 |
Q |
| |
|
| ||||||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
30460918 |
acaatcaatatgtgttcttgcattgtcttgttgaatgaatattgg |
30460962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 10328659 - 10328585
Alignment:
| Q |
165 |
ctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggttgacgcaccaaacgaatatcaaatcca |
239 |
Q |
| |
|
||||| || ||||| ||||| ||||||| ||||||||| ||||| ||||||| || || ||||||||||||||| |
|
|
| T |
10328659 |
ctaaaaaacccaaggtctaagacatttagatcaggagaatttggaggttgacacattaagcgaatatcaaatcca |
10328585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 4755577 - 4755215
Alignment:
| Q |
14 |
tactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggataatgtcatactcttcaaatgacttttgaactgcatccaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4755577 |
tactttcatgatttcaatcatacatgattgaagtgataaaaatatacgatttgacaggatagtgtcatactcttcaaatgacttttgaactgcatccaca |
4755478 |
T |
|
| Q |
114 |
agatcatcaacagagttaggagacttcttgtgttgtaaggcttgaactgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggtt |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4755477 |
atatcatcaacagagttaggagacttcttgtgttgtaaggcttgaattgacctaaagaaaccaagatctaaaacatttaaatcaggagagtttggtggtt |
4755378 |
T |
|
| Q |
214 |
gacgcaccaaacgaatatcaaatccattttgtgaggctacacgacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4755377 |
gacgcaccaaacgaatatcaaatccattttgtgaggctacacaacgaaaatcttgatcttcagaatcaatgtgtgtttttgcattgtcttgttgaataaa |
4755278 |
T |
|
| Q |
314 |
tattggttgacccctttcttcaattggccatagttccatcatggaaggtacaacttgctcaag |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4755277 |
tattggttgacccctttcttcaattggccatagttccatcatggaaggtacaacttgctcaag |
4755215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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