View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_49 (Length: 389)
Name: NF6131_low_49
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 93 - 373
Target Start/End: Complemental strand, 52764586 - 52764307
Alignment:
| Q |
93 |
tcttctgggtactaacaagtccattattccaacatgtttaactggtacctcaaaataggccccatattgagtacttttgagatgtcnnnnnnngtccgaa |
192 |
Q |
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| T |
52764586 |
tcttctgggtactaacaagtccattattccaacatgtttaactggtacctcaaaataggccccatattgagtacttttgagatgtctttttttgtccgaa |
52764487 |
T |
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| Q |
193 |
gttttgaattatggttcacactattcagtttcaatcaaatcaatgcttgtggaaccgtagatccggataaactctatcaatttcaatcttgaaggcttaa |
292 |
Q |
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| T |
52764486 |
gttttgaattatgtttcacactattcagtttcaatcaaatcaatgcttgtggaaccgtagatccggataaactctatcaatttgcatcttgaaggcttaa |
52764387 |
T |
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| Q |
293 |
aatcagaagtgtcttatttgttgtctttttgagataaaaacaatttttgtgaaagtgactagtgatgaatgtggatcatta |
373 |
Q |
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| T |
52764386 |
aatcagaagtgtcttatttgttgtctttttgagat-aaaacaatttttgtgaaagtgactagtgatgaatgtggatcatta |
52764307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 133 - 373
Target Start/End: Complemental strand, 52770536 - 52770280
Alignment:
| Q |
133 |
actggtacctcaaaataggccccatattgagtacttttgagatg---tcnnnnnnngtccgaagttttgaattatggttcacactattcagtttcaatca |
229 |
Q |
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| T |
52770536 |
actggtacttaaaaataggccccatactgagtacttttgagatggattttttttttgtctgaagttttgaattatgtttcacactattcagtttcaatca |
52770437 |
T |
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| Q |
230 |
aatcaatgcttgtggaaccgtagatccggataaactctatcaatttcaatc--------------ttgaaggcttaaaatcagaagtgtcttatttgttg |
315 |
Q |
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| T |
52770436 |
aatcaatgcttgtggaactgtagatccggataatctttatcgatttgtatctcaatattttgaagttgaaggcttaaaatcaatagtgtcttattttttg |
52770337 |
T |
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| Q |
316 |
tctttttgagataaaaacaatttttgtgaaagtgactagtgatgaatgtggatcatta |
373 |
Q |
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| T |
52770336 |
tctttttgggat-aaaacaattcttgtgaaagcggttggtgataaatgtggatcatta |
52770280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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