View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_51 (Length: 384)
Name: NF6131_low_51
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 35415334 - 35415683
Alignment:
| Q |
17 |
ccaaaaccatccatttgaacgtaacgtcgaagctccaaaccgagtgaacacacaccgaaacttgaccttcgtacctagtaaccaataagtctgcattcaa |
116 |
Q |
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| T |
35415334 |
ccaaaaccatccatttgaacgtaacgtcgaggctccaaactgagtgaacacacaccgaaacttgaccttcgtacc-agtaaccaataagtctgcattcaa |
35415432 |
T |
|
| Q |
117 |
tcaaggagaattgaaatagatattaggcta-ccccaaaagacaagacatatctgagtaaaatcaaactatcttttgatgtatgatgtataaaccaaccgt |
215 |
Q |
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| T |
35415433 |
tcaaggagaattgaaatagatattagactatccccaaaagacaagacatatttgagtaaaat-------tcttttgatgtatgatgtataaaccaaccat |
35415525 |
T |
|
| Q |
216 |
aaacacagatagattcacgaaccaagccc-taaaataaatcacacatgca---acaaccctttcgagcccttcgaaccacgcgcgaagcaaaccaggtat |
311 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35415526 |
caacacagatagattcacgaaccaagcccctaaaataaatcacacatgcattaacaaccctttcgagcccttcgaaccacgcgcgaagcaaaccaggtat |
35415625 |
T |
|
| Q |
312 |
gagaaaacaaaaccaacacgacggcaacaaggttttgctgcagaaccatagaacaaac |
369 |
Q |
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| T |
35415626 |
gagaaaagaaaaccaacacgacggcaacaaggttttgctgcagaaccatagaacaaac |
35415683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 7406753 - 7406832
Alignment:
| Q |
51 |
ccaaaccgagtgaacacacaccgaaactt-gaccttcgtacctagtaaccaataagtctgcattcaatcaaggagaattga |
130 |
Q |
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| T |
7406753 |
ccaaaccgagtgaacacccaccagaacttggatcttcgtacc-atcaaccaatatgtctgaattcaatcaaagagaattga |
7406832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 320
Target Start/End: Original strand, 20114721 - 20114870
Alignment:
| Q |
175 |
aatcaaactatcttttgatgtatgatgtataaaccaaccgtaaacacagatagattcacgaaccaag-ccctaaaataaatcacacatgc---aacaacc |
270 |
Q |
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||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||| || |||||||||| || |||| || |
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| T |
20114721 |
aatcaaattatcttttgatgtatggtgtataaaccaaccgtcaacatagatagattcacgaaccaagcccctgcaacaaatcacacaggcattaacagcc |
20114820 |
T |
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| Q |
271 |
ctttcgagcccttcgaaccacgcgcgaagcaaaccaggtatgagaaaaca |
320 |
Q |
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| T |
20114821 |
ctttcgagctcttcgaaccacacgcgaagcaaaccaggtctgagaaaaca |
20114870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 20114575 - 20114689
Alignment:
| Q |
16 |
accaaaaccatccatttgaacgtaacgtcgaagctccaaaccgagtgaacacacaccgaaactt-gaccttcgtacctagtaaccaataagtctgcattc |
114 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||| |||| |||| |||||||| || ||||| ||||||| |||| || ||||||| ||| || |||| |
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| T |
20114575 |
accaaaaccatccatttgaacgcaacgtcgcgactctaaactgagtcaacacacaacggaacttggaccttcctacc-agcaaccaatcagtatgaattc |
20114673 |
T |
|
| Q |
115 |
aatcaaggagaattga |
130 |
Q |
| |
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||| |||||| ||||| |
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| T |
20114674 |
aattaaggaggattga |
20114689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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