View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_52 (Length: 383)
Name: NF6131_low_52
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 2764687 - 2764311
Alignment:
| Q |
1 |
caacaagcaaaaatcccgaccttgtaagaatgcggtatgatcgtttgaggagtgtggctggtagaatacaaacggttgtaggtgatttggctagccaggg |
100 |
Q |
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| T |
2764687 |
caacaagcaaaaatcccgaccttgtaagaatgcggtatgatcgtttgaggagtgtggctggtagaatacaaaccgttgtaggtgatttggctagccaggg |
2764588 |
T |
|
| Q |
101 |
tgagaggattcatgcactgttgagctggagagatccgcgtgctacttctttattcattactttctgtttgttagctgctttggtgttatatgttactcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2764587 |
tgagaggattcatgcactgttgagctggagagatccgcgtgctacttctttattcattactttctgtttgttagctgctttggtgttatatgttactcct |
2764488 |
T |
|
| Q |
201 |
tttcaaatggtggctggtttagcaggtttctatttcatgaggcatccgagatttcgacacaggcttccatctgcaccgatcaatttcttccgtcgtcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2764487 |
tttcaaatggtggctggtttagcaggtttctatttcatgaggcatccgagatttcgacacaggcttccatctgcaccgatcaatttcttccgtcgtcttc |
2764388 |
T |
|
| Q |
301 |
ctgcaagaactgatagtatgttgtagaattctttcttcttggttccaattcaccattttgcttgacagtataatata |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2764387 |
ctgcaagaactgatagtatgttgtagaattctttcttcttggttccaattcaccattttgcttgacagtatagtata |
2764311 |
T |
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