View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_53 (Length: 382)
Name: NF6131_low_53
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_53 |
 | |
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| [»] scaffold0003 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 32796176 - 32795804
Alignment:
| Q |
1 |
taaatctccacgcctactcggatgcgatgagaaggcgacaaggatgattatatctccaccactggttatctgttatatcttggcagcacgcccatctctt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32796176 |
taaatctccacgcctactcggatgcagtgagaaggcgacaaggatgattatatctccaccactggttatctgttatatcttggcagcacacccatctctt |
32796077 |
T |
|
| Q |
101 |
ggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttggctgacacggcaagtgagctgctatgggtcctttccct |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32796076 |
ggagctcttgaaaacaacgttttgttgctcggtctttcaaagaagcagaatataaagccttggctgacacggcaagtgagctgctatgggtcctttccct |
32795977 |
T |
|
| Q |
201 |
attcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggggcta-ccaccttagcgctaatcctgtatttcactctcgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
32795976 |
attcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggtgctacccatcttagcgctaatcctgtatttcactctcgg |
32795877 |
T |
|
| Q |
300 |
acgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttg |
372 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32795876 |
atgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttg |
32795804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 19670151 - 19670525
Alignment:
| Q |
1 |
taaatctccacgcctactcggatgcga--tgagaaggcgacaaggatgattatatctccaccactggttatctgttatatcttggcagcacgcccatctc |
98 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
19670151 |
taaatctccacgcctactcggatgcggacttggtaggcgacaaggatgattatatctccaccactagttatctgttatatcttggcagcacgcccatctc |
19670250 |
T |
|
| Q |
99 |
ttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttggctgacacggcaagtgagctgctatgggtcctttcc |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
19670251 |
atggagctctcgaaaacaacgttctgttgctcgatcttccacaaaagcaaaatataaagccttggctgacacgacaagtgagctgctatgggtcctttcc |
19670350 |
T |
|
| Q |
199 |
ctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggggcta-ccaccttagcgctaatcctgtatttcactctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||||||||||||||| |
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|
| T |
19670351 |
ctattcactgaacttggccacactccaacagccaatccagtcatctattgtgacaacctcggtgctacccaccttagtgttaatcctgtatttcactctc |
19670450 |
T |
|
| Q |
298 |
ggacgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttg |
372 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |||||| |||| |
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|
| T |
19670451 |
ggatgaaacatatagccttaacctatcattttgtctgagaaaatgttcaacatggcaagtttcgagtatcatttg |
19670525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 22827679 - 22827305
Alignment:
| Q |
1 |
taaatctccacgcctactcggatgcga--tgagaaggcgacaaggatgattatatctccaccactggttatctgttatatcttggcagcacgcccatctc |
98 |
Q |
| |
|
||||||||||||||||||| |||||| || | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22827679 |
taaatctccacgcctactctgatgcggactgggcaagcgacaaagatgattatatctccaccactggttatctgttatatcttggcagcacgcccatctc |
22827580 |
T |
|
| Q |
99 |
ttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttggctgacacggcaagtgagctgctatgggtcctttcc |
198 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
22827579 |
ttggagctgtcaaaaacaacgttttgttgctcgctcttccatagaagcagaatataaagccttggctgacacgacaagtgtgctgctatgggtcctttcc |
22827480 |
T |
|
| Q |
199 |
ctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggggcta-ccaccttagcgctaatcctgtatttcactctc |
297 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||| ||||||||||||| |||||||| |
|
|
| T |
22827479 |
ctattcaatgaacttggccacactccaacaaccaatccagtcatttattgtgacaacctcggtgctacccaacttagtgctaatcctgtatctcactctc |
22827380 |
T |
|
| Q |
298 |
ggacgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttg |
372 |
Q |
| |
|
||| ||||||||||| |||| | || ||||||||| || ||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
22827379 |
ggatgaaacatatagtcttaacttaccattttgtctgataaaatgttcaaaatggcaagtttcgagtatcctttg |
22827305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 40 - 371
Target Start/End: Original strand, 11678362 - 11678694
Alignment:
| Q |
40 |
aaggatgattatatctccaccactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttca |
139 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
11678362 |
aaggatgattatatctccaccactagttatctgttatatcttggcagcacacccatctcttggagctctcgaaaacaacgttttgttgctcgatcttcca |
11678461 |
T |
|
| Q |
140 |
aagaagcagaatataaagccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagt |
239 |
Q |
| |
|
||||||||| ||||||||||| ||||||| | | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
11678462 |
cagaagcagagtataaagccttagctgacatgacgagtgagctgatatgggtcctttccttattcactgaacttggccacactccaacagccattccaaa |
11678561 |
T |
|
| Q |
240 |
catctattgtgacaacctcggggctacc-accttagcgctaatcctgtatttcactctcggacgaaacatatagccttagcctatcattttgtcagagaa |
338 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||| | ||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| || || |
|
|
| T |
11678562 |
catctattgtggcaacctcgatgctacctaccttagtgttaatcctgtattttactctcggatgaaatatatagccttagcctatcattttgtccgaaaa |
11678661 |
T |
|
| Q |
339 |
aatgtccaacatggcaagtttcaagtatccttt |
371 |
Q |
| |
|
||||| |||||||||||||||| | |||||||| |
|
|
| T |
11678662 |
aatgttcaacatggcaagtttcgactatccttt |
11678694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 35 - 372
Target Start/End: Complemental strand, 2922458 - 2922120
Alignment:
| Q |
35 |
gcgacaaggatgattatatctccaccactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatc |
134 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| | || |
|
|
| T |
2922458 |
gcgacatggatgattatatctccaccactagttatctgttatatcttggcagcacacccatctcttagagctctcgaaaacaacgttctgttgcttgctc |
2922359 |
T |
|
| Q |
135 |
tttcaaagaagcagaatataaagccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaat |
234 |
Q |
| |
|
|| || ||||||| ||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||||||||| ||| |||||||| ||||| |
|
|
| T |
2922358 |
ttccatagaagcaaaatataaagccttggctaacacggagagtgagcttctatgggtcctttccctattcaatgaacttggtcaccctccaacagccaat |
2922259 |
T |
|
| Q |
235 |
ccagtcatctattgtgacaacctcggggcta-ccaccttagcgctaatcctgtatttcactctcggacgaaacatatagccttagcctatcattttgtca |
333 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||||| |||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2922258 |
ccagtcatctattgtgacaacctcagtgctacccaccttagtgctaatccagtatttcacttttggatgaaacatatagccttagcctatcattttgtcc |
2922159 |
T |
|
| Q |
334 |
gagaaaatgtccaacatggcaagtttcaagtatcctttg |
372 |
Q |
| |
|
|||||||||| ||| |||| | ||||| ||||||||||| |
|
|
| T |
2922158 |
gagaaaatgtacaaaatggaatgtttcgagtatcctttg |
2922120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 27413879 - 27413719
Alignment:
| Q |
58 |
accactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaag |
157 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||| | ||||||||||||||||| |
|
|
| T |
27413879 |
accactggttatctattatatcttggcagcacgcccatctcttggagctctctaaaacaatgttctgttgctcgctcttctacagaagcagaatataaag |
27413780 |
T |
|
| Q |
158 |
ccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggcca |
218 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
27413779 |
ccttggctgacacggcgagtgagctgttatgggtcctttccctattcactaaatttggcca |
27413719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 214 - 372
Target Start/End: Complemental strand, 27341043 - 27340880
Alignment:
| Q |
214 |
ggccacactccaacaaccaatccagtcatctattgtgacaacctcggggctac-----caccttagcgctaatcctgtatttcactctcggacgaaacat |
308 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
27341043 |
ggccacactccaccatccaatccagtcatctattgtgacaacctcggtgctacgtacccaccttagtgctaattctgtatttcactctcggatgaaacat |
27340944 |
T |
|
| Q |
309 |
atagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttg |
372 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| | | |||||||||||| ||||||||||| |
|
|
| T |
27340943 |
atagccttagcctatcattttttccgagaaaatgttcgaaatggcaagtttcgagtatcctttg |
27340880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 214 - 372
Target Start/End: Complemental strand, 27401783 - 27401620
Alignment:
| Q |
214 |
ggccacactccaacaaccaatccagtcatctattgtgacaacctcggggctac-----caccttagcgctaatcctgtatttcactctcggacgaaacat |
308 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
27401783 |
ggccacactccaccatccaatccagtcatctattgtgacaacctcggtgctacgtacccaccttagtgctaattctgtatttcactctcggatgaaacat |
27401684 |
T |
|
| Q |
309 |
atagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttg |
372 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| | | |||||||||||| ||||||||||| |
|
|
| T |
27401683 |
atagccttagcctatcattttttccgagaaaatgttcgaaatggcaagtttcgagtatcctttg |
27401620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 79246 - 79406
Alignment:
| Q |
58 |
accactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaag |
157 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||| | ||||||||||||||||| |
|
|
| T |
79246 |
accactggttatctattatatcttggcagcacgcccatctcttggagctctctaaaacaatgttctgttgctcgctcttctacagaagcagaatataaag |
79345 |
T |
|
| Q |
158 |
ccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggcca |
218 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
79346 |
ccttggctgacacggcgagtgagctgttatgggtcctttccctattcactaaatttggcca |
79406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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