View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_55 (Length: 377)
Name: NF6131_low_55
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 26937660 - 26937312
Alignment:
| Q |
11 |
cacagaagcttgacatactagctttagaattttcacggcgactgtgcattgggacgcagtattggattgactaacgtgtatccaaaggccaagttgtttt |
110 |
Q |
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| T |
26937660 |
cacagaagcttgacatactagcttcagaattttcacggtgaccgtgcattgggacgcagtattggattgactaacgtgtatccaaagtctaagttgtttt |
26937561 |
T |
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| Q |
111 |
gcgaaagacatgctatttaannnnnnnnnacttggaccatattattaaccatgtcttttcaacatgagaaataaaaacaagtctaccaagtattttgttc |
210 |
Q |
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| T |
26937560 |
gcga----catgctattttttttttttttacttggaccatattattaaccatgtcttttcaacatgagaaataaaaacaagtctaccaagtattttgttc |
26937465 |
T |
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| Q |
211 |
actgttcagacaccttgagtgaaattgtattaattgaagatatatgcatttgtgatcgtacctctaaaaattct--cagtcagaatggtggtgattctac |
308 |
Q |
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| T |
26937464 |
actgttcagacaccttgagtgaaattgtattaattgaagatatatgcatttgtgatagtacctctaaaaattcttacagtcagaatggtggtgattctac |
26937365 |
T |
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| Q |
309 |
ttctaagttgtaatcatcaaaagctatgaatcctaccctatcatatttgtatt |
361 |
Q |
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| T |
26937364 |
ttctaagttgtaatcgtcaaaagctatgaatcctaccctatcatatttgtatt |
26937312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 26135535 - 26135618
Alignment:
| Q |
13 |
cagaagcttgacatactagctttagaattttcacggcgactgtgcattgggacgcagtattggattgactaacgtgtatccaaa |
96 |
Q |
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| T |
26135535 |
cagaagcttgatatactagcttctgaattttcacggcaaccgtgcattgggacgcggtattagattggcaaacgcttatccaaa |
26135618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 20791071 - 20791137
Alignment:
| Q |
13 |
cagaagcttgacatactagctttagaattttcacggcgactgtgcattgggacgcagtattggattg |
79 |
Q |
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| T |
20791071 |
cagaagcttgatatactagcttcagaattctcacggcaaccgtgcattgggacgcggtaatggattg |
20791137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 8917610 - 8917678
Alignment:
| Q |
28 |
ctagctttagaattttcacggcgactgtgcattgggacgcagtattggattgactaacgtgtatccaaa |
96 |
Q |
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| T |
8917610 |
ctagcttcagaattttcacgacgaaagtgcattgggatgcggtattggattgacaaacatgtttccaaa |
8917678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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