View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_57 (Length: 372)
Name: NF6131_low_57
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 56377546 - 56377392
Alignment:
| Q |
197 |
gttggtttagctaattaattgagaatcaagtagtcagccacatacagaagaagaattgatgaattggagaagaagtgaagtgaagatacatcaaatacaa |
296 |
Q |
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| T |
56377546 |
gttggtttagctaattaattgagaatgaagtagtcagccacatgcagaagaa---ttgatgaattggagaagaagtgaagtgaagatacatcaaatacaa |
56377450 |
T |
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| Q |
297 |
gtttccatgcttattattatattatgttatgacaggataataacattagagtaactag |
354 |
Q |
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| T |
56377449 |
gtttccatgcttattattatattatgttatgacaggataataacattagagtaactag |
56377392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 56377734 - 56377613
Alignment:
| Q |
1 |
aagaattgcaagcaagcaattaattagtagggcatgcactactgcagaaacatatggtaatgatgagaagacaactttataagcatacaagacactttcc |
100 |
Q |
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| T |
56377734 |
aagaattgcaagcaagtaattaattagtagggcatccact---gcagaaacatatggtaatgatgagaagacaactttataagcatacaagacactttcc |
56377638 |
T |
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| Q |
101 |
caccctgggtgttatatctctcctc |
125 |
Q |
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| T |
56377637 |
caccctgggtgttatatctctcctc |
56377613 |
T |
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