View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_58 (Length: 357)
Name: NF6131_low_58
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 345
Target Start/End: Original strand, 28232695 - 28233035
Alignment:
| Q |
6 |
agtagcataggtacatatgtttagtactttagtgtaacacctgataagtcatagttcttgttctttttagggtttgttttacttgctatccttgtcactt |
105 |
Q |
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| T |
28232695 |
agtagcatatgtacatatgtttagtcgtttagtgtaacacctgataagtcatagttcttgttctttttagggtttgttttacttgctatccttgtcactt |
28232794 |
T |
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| Q |
106 |
tgttttacttgctat-ttggtttacggcatgtttgtattgttgtaggtttatcctcaatcatttcatacttcttgtatgagtgatttgtttaataaatgt |
204 |
Q |
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| T |
28232795 |
tgttttacttgctatattggtttactgcatgtttgtattgttgtaggtttatcctcaatcatttcatacttcttgtatgagtgatttgtttaataaatgt |
28232894 |
T |
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| Q |
205 |
gccattaacaaaaaattactatgatttgcttgcttcgcatttataggactgttcaaaaagtcaagtatagatattaagtcaaagacgatgcattcaagcc |
304 |
Q |
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| T |
28232895 |
gccattaacaaaaaattactatgatttgcttgcttcgcatttgtaggactgttcaaaaagccaagtgtagattttaagccaaagacgatgcattcaagct |
28232994 |
T |
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| Q |
305 |
ttataagacatgaacaacttagatggtgccaaaaaattgat |
345 |
Q |
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| T |
28232995 |
ttataagacatgacctacttagatggtgccaaaaaaatgat |
28233035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 15133443 - 15133402
Alignment:
| Q |
169 |
catacttcttgtatgagtgatttgtttaataaatgtgccatt |
210 |
Q |
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| T |
15133443 |
catactgcttgtatgggtgaattgtttaataaatgtgccatt |
15133402 |
T |
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