View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_63 (Length: 347)

Name: NF6131_low_63
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_63
NF6131_low_63
[»] chr2 (4 HSPs)
chr2 (182-333)||(37155689-37155840)
chr2 (30-123)||(37155899-37155992)
chr2 (182-330)||(37161293-37161441)
chr2 (182-331)||(37150565-37150714)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 182 - 333
Target Start/End: Complemental strand, 37155840 - 37155689
Alignment:
Q  182 tggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaatccctgata 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37155840 tggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaatccctgata 37155741  T
Q  282 accatctagccgtcgaaactctccttctctccgttgatccttatcttcgcag 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37155740 accatctagccgtcgaaactctccttctctccgttgatccttatcttcgcag 37155689  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 37155992 - 37155899
Alignment:
Q  30 taagcataagccacatgcaatttcatacgtgagaatcaaacactacatgttggtgacattgcatgggaagtacgtaaaactataattatctgct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37155992 taagcataagccacatgcaatttcatacgtgagaatcaaacactacatgttggtgacattgcatgggaagtacgtaaaactataattatctgct 37155899  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 182 - 330
Target Start/End: Complemental strand, 37161441 - 37161293
Alignment:
Q  182 tggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaatccctgata 281  Q
    ||||||||||||| |||||   ||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||    
T  37161441 tggtacttagctggatattccactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaatccctgata 37161342  T
Q  282 accatctagccgtcgaaactctccttctctccgttgatccttatcttcg 330  Q
    | |||||||| || |||||||||||||| |||||||| |||||||||||    
T  37161341 atcatctagcagttgaaactctccttctttccgttgacccttatcttcg 37161293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 182 - 331
Target Start/End: Complemental strand, 37150714 - 37150565
Alignment:
Q  182 tggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaatccctgata 281  Q
    |||||| |||||| ||| | |||||| |||||||| || || ||||||||||||||||| |||||||||| |||||||||| | || ||||||||||||     
T  37150714 tggtacgtagctgcatactctcctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgcccatgaatcaatccctgatg 37150615  T
Q  282 accatctagccgtcgaaactctccttctctccgttgatccttatcttcgc 331  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||    
T  37150614 accatctaatcgtcgaaactctccttctctctgttgatccatatcttcgc 37150565  T

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