View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_65 (Length: 343)
Name: NF6131_low_65
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 44881296 - 44880978
Alignment:
| Q |
18 |
catattccatctctcttctaacgtattgaattttccttctcaatccaagtagaaactctcctatatctcatgaagcaattttggagcttgacacaacagg |
117 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881296 |
catattccatctctcttctaacgtattgaaatttctttctcaatccaagtagaaactctcctatatctcatgaagcaattttggagcttgacacaacagg |
44881197 |
T |
|
| Q |
118 |
aaacctcattctcatggacnnnnnnntcaccatatgggccacaaacacttcaaatgctaatgtagaatcagcaaccatgtcagaatcaggcaacttcatc |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881196 |
aaacctcattctcatggacaaaaaaatcaccatatgggccacaaacacttcaaatgctaatgtagaatcagcaaccatgtcagaatcaggcaacttcatc |
44881097 |
T |
|
| Q |
218 |
cttcacaacataaataaccaccctatatggcagagtttttctcaaccttcaaacacactcctcccaaaccagcctctaacagtttcttcagaattaacat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881096 |
cttcacaacataaataaccaccctatatggcagagtttttctcaaccttcaaacacactcctcccaaaccagcctctaacagtttcttcagaattaacat |
44880997 |
T |
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| Q |
318 |
cacaaaaatcttcatctca |
336 |
Q |
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||| ||||||||||||||| |
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| T |
44880996 |
caccaaaatcttcatctca |
44880978 |
T |
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