View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_66 (Length: 339)
Name: NF6131_low_66
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 54964359 - 54964047
Alignment:
| Q |
17 |
aaatgatgatgaaccaataataatttatatatgtcaaagtaagttgcgttatttgacctttcacgcaaaactgtatagctaatgaaaaagataacttttc |
116 |
Q |
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| T |
54964359 |
aaatgatgatgaaccaataataatttatatatgtcaaagtaagttgcgttatttgacctttcacgcaaaactgtatagctaatgaaaaagataacttttc |
54964260 |
T |
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| Q |
117 |
tcggtggtttcatacgtaattttgtcttgaaagtcaaacatttatcaaaataataaatattagtaaaagttattcattttgatcttttgaaccttctttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54964259 |
tcggtggtttcatacgtaattttgtcttgaaagtcaaacatttatcaaaataataaatattagtaaaagttattcattttgatcttttgaaccttctttt |
54964160 |
T |
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| Q |
217 |
gattcataaaacaatgtcataaggatatttattaggataagtttcttagcatgtacttattattagggtatgtttggtttgcaaaatagtacgtatctga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54964159 |
gattcataaaacaatgtcataaggatatttattaggataagtttcttagcatgtacttattattagggtatgtttggtttgcaaaatagtacgtactgga |
54964060 |
T |
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| Q |
317 |
cataacagtataa |
329 |
Q |
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||||||||||||| |
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| T |
54964059 |
cataacagtataa |
54964047 |
T |
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