View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_68 (Length: 332)

Name: NF6131_low_68
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_68
NF6131_low_68
[»] chr5 (31 HSPs)
chr5 (164-317)||(10721813-10721964)
chr5 (164-321)||(41834422-41834578)
chr5 (164-324)||(28494871-28495029)
chr5 (164-324)||(16752930-16753089)
chr5 (241-324)||(27307163-27307246)
chr5 (164-315)||(13557019-13557168)
chr5 (243-317)||(19359501-19359576)
chr5 (243-317)||(14215346-14215421)
chr5 (164-300)||(32305845-32305979)
chr5 (243-317)||(5819034-5819109)
chr5 (243-317)||(16018952-16019027)
chr5 (164-226)||(22651767-22651830)
chr5 (164-287)||(27307455-27307579)
chr5 (241-300)||(28495225-28495284)
chr5 (243-316)||(29454845-29454919)
chr5 (249-317)||(24331672-24331741)
chr5 (164-213)||(28495301-28495350)
chr5 (243-317)||(164295-164370)
chr5 (243-317)||(2864859-2864934)
chr5 (243-317)||(8461296-8461371)
chr5 (164-226)||(16752609-16752672)
chr5 (243-317)||(18183075-18183150)
chr5 (164-230)||(20266367-20266434)
chr5 (243-317)||(25000454-25000529)
chr5 (243-316)||(15709335-15709409)
chr5 (241-298)||(22651447-22651505)
chr5 (164-217)||(15115558-15115611)
chr5 (243-317)||(8647803-8647878)
chr5 (241-298)||(14340793-14340851)
chr5 (164-217)||(4966843-4966896)
chr5 (164-217)||(38900671-38900724)
[»] chr6 (21 HSPs)
chr6 (164-324)||(32836034-32836187)
chr6 (164-298)||(35163572-35163706)
chr6 (164-300)||(32836381-32836515)
chr6 (243-317)||(31470420-31470495)
chr6 (164-267)||(35163211-35163312)
chr6 (243-317)||(20741466-20741541)
chr6 (243-317)||(11445352-11445427)
chr6 (243-317)||(18257502-18257577)
chr6 (243-317)||(18505024-18505099)
chr6 (251-317)||(22219718-22219785)
chr6 (243-300)||(10900044-10900102)
chr6 (241-278)||(22534172-22534209)
chr6 (243-309)||(12935262-12935329)
chr6 (171-213)||(835695-835737)
chr6 (267-317)||(1149558-1149608)
chr6 (251-316)||(23075494-23075560)
chr6 (171-212)||(835428-835469)
chr6 (241-278)||(11523788-11523825)
chr6 (241-278)||(33095817-33095854)
chr6 (243-298)||(11276695-11276751)
chr6 (243-322)||(15827745-15827824)
[»] chr4 (34 HSPs)
chr4 (164-324)||(40160451-40160609)
chr4 (164-300)||(17504001-17504135)
chr4 (172-324)||(35193664-35193813)
chr4 (243-324)||(2118398-2118480)
chr4 (164-300)||(35193335-35193469)
chr4 (243-317)||(22434284-22434359)
chr4 (243-317)||(46193510-46193585)
chr4 (243-317)||(51021161-51021236)
chr4 (164-298)||(24336149-24336282)
chr4 (243-316)||(54995174-54995248)
chr4 (164-278)||(229565-229678)
chr4 (243-317)||(11153251-11153326)
chr4 (243-317)||(12234694-12234769)
chr4 (243-317)||(12503541-12503616)
chr4 (243-317)||(20470876-20470951)
chr4 (243-317)||(45082789-45082864)
chr4 (243-316)||(25447352-25447426)
chr4 (164-212)||(24335788-24335836)
chr4 (164-230)||(229188-229255)
chr4 (243-317)||(4219924-4219999)
chr4 (243-317)||(15523340-15523415)
chr4 (243-317)||(18751704-18751779)
chr4 (243-317)||(23494808-23494883)
chr4 (241-300)||(40160196-40160255)
chr4 (243-317)||(48526546-48526621)
chr4 (243-315)||(25938038-25938111)
chr4 (280-324)||(10795685-10795729)
chr4 (164-212)||(23986547-23986595)
chr4 (164-212)||(51309976-51310024)
chr4 (243-300)||(17504343-17504401)
chr4 (164-217)||(6617128-6617181)
chr4 (164-217)||(10795777-10795830)
chr4 (174-230)||(18965177-18965234)
chr4 (164-217)||(19528896-19528949)
[»] chr1 (35 HSPs)
chr1 (164-324)||(45048497-45048654)
chr1 (164-300)||(17088173-17088312)
chr1 (164-298)||(44291328-44291462)
chr1 (243-317)||(17433580-17433655)
chr1 (241-300)||(45048257-45048316)
chr1 (164-294)||(44291701-44291830)
chr1 (243-317)||(5539921-5539996)
chr1 (165-298)||(9833538-9833670)
chr1 (164-277)||(44802578-44802690)
chr1 (164-214)||(23526685-23526735)
chr1 (248-317)||(33144027-33144097)
chr1 (164-300)||(39485092-39485226)
chr1 (249-317)||(21856153-21856222)
chr1 (164-217)||(29021331-29021384)
chr1 (164-212)||(25274783-25274831)
chr1 (243-317)||(15173459-15173534)
chr1 (241-300)||(17088524-17088583)
chr1 (243-317)||(17112386-17112461)
chr1 (243-317)||(18984484-18984559)
chr1 (243-317)||(39154385-39154460)
chr1 (243-317)||(50970383-50970458)
chr1 (243-300)||(9019345-9019403)
chr1 (243-300)||(29307324-29307382)
chr1 (243-316)||(29869985-29870059)
chr1 (164-229)||(50926694-50926760)
chr1 (164-277)||(50926257-50926371)
chr1 (243-317)||(15646297-15646372)
chr1 (164-215)||(48173775-48173826)
chr1 (243-324)||(26859164-26859246)
chr1 (164-217)||(2868174-2868227)
chr1 (164-217)||(17088605-17088658)
chr1 (164-217)||(17641835-17641888)
chr1 (241-278)||(29021270-29021307)
chr1 (241-278)||(48174121-48174158)
chr1 (164-217)||(50304466-50304519)
[»] chr2 (22 HSPs)
chr2 (164-300)||(28143414-28143548)
chr2 (164-300)||(14942228-14942365)
chr2 (243-317)||(18450935-18451010)
chr2 (243-317)||(43058698-43058773)
chr2 (164-296)||(31797166-31797296)
chr2 (243-317)||(28616979-28617054)
chr2 (243-313)||(239721-239792)
chr2 (243-317)||(40815450-40815525)
chr2 (243-316)||(40027506-40027580)
chr2 (164-217)||(2190542-2190595)
chr2 (243-314)||(7446714-7446786)
chr2 (164-226)||(11540094-11540157)
chr2 (243-316)||(8425459-8425533)
chr2 (164-217)||(42192267-42192320)
chr2 (164-217)||(42192709-42192762)
chr2 (243-317)||(22374690-22374765)
chr2 (243-316)||(3025829-3025903)
chr2 (243-316)||(11090886-11090960)
chr2 (241-298)||(33920714-33920772)
chr2 (164-217)||(62984-63037)
chr2 (243-315)||(1978476-1978549)
chr2 (249-316)||(14432507-14432575)
[»] chr3 (43 HSPs)
chr3 (164-316)||(50900559-50900710)
chr3 (164-324)||(37076034-37076193)
chr3 (164-300)||(27200076-27200210)
chr3 (164-324)||(8873717-8873876)
chr3 (164-300)||(36701480-36701615)
chr3 (164-300)||(55192145-55192279)
chr3 (164-300)||(27199729-27199864)
chr3 (243-316)||(41047065-41047139)
chr3 (243-318)||(5137345-5137421)
chr3 (243-317)||(4275729-4275804)
chr3 (243-317)||(37727295-37727370)
chr3 (243-317)||(43973805-43973880)
chr3 (243-316)||(31778758-31778832)
chr3 (164-300)||(49408167-49408300)
chr3 (243-315)||(26837465-26837538)
chr3 (243-317)||(17464596-17464671)
chr3 (243-317)||(22424919-22424994)
chr3 (251-313)||(25853347-25853410)
chr3 (243-317)||(27393766-27393841)
chr3 (164-300)||(36701133-36701270)
chr3 (241-300)||(37075791-37075850)
chr3 (243-313)||(2323483-2323553)
chr3 (243-316)||(24300661-24300735)
chr3 (251-316)||(39555691-39555757)
chr3 (241-299)||(50900913-50900971)
chr3 (243-315)||(29801783-29801856)
chr3 (249-324)||(23644823-23644899)
chr3 (164-300)||(8874070-8874205)
chr3 (243-309)||(20840934-20841001)
chr3 (241-300)||(49407898-49407957)
chr3 (164-217)||(52237283-52237336)
chr3 (243-314)||(26274672-26274744)
chr3 (164-204)||(37075713-37075753)
chr3 (164-212)||(49407823-49407871)
chr3 (241-300)||(37847204-37847263)
chr3 (164-226)||(52375787-52375850)
chr3 (164-226)||(30513749-30513811)
chr3 (241-298)||(50662798-50662856)
chr3 (164-217)||(33412620-33412673)
chr3 (164-213)||(40275120-40275169)
chr3 (164-217)||(43222856-43222909)
chr3 (164-217)||(47431723-47431776)
chr3 (164-217)||(50900993-50901046)
[»] chr7 (27 HSPs)
chr7 (164-300)||(35578926-35579060)
chr7 (164-324)||(9393763-9393921)
chr7 (164-317)||(4477729-4477881)
chr7 (243-317)||(19590890-19590965)
chr7 (243-317)||(37787132-37787207)
chr7 (164-300)||(35579270-35579404)
chr7 (243-317)||(19830785-19830860)
chr7 (164-230)||(39136713-39136780)
chr7 (248-317)||(34533901-34533971)
chr7 (164-229)||(39136986-39137052)
chr7 (164-276)||(49064061-49064171)
chr7 (243-315)||(29099955-29100028)
chr7 (164-298)||(34595158-34595291)
chr7 (243-314)||(2658944-2659016)
chr7 (250-317)||(32004726-32004794)
chr7 (241-300)||(32427404-32427463)
chr7 (243-317)||(38859006-38859081)
chr7 (183-285)||(45815465-45815566)
chr7 (164-229)||(49064173-49064239)
chr7 (164-217)||(787252-787305)
chr7 (164-226)||(26026344-26026407)
chr7 (164-217)||(5333907-5333960)
chr7 (164-217)||(5334285-5334338)
chr7 (164-217)||(9394196-9394249)
chr7 (164-217)||(33880647-33880700)
chr7 (248-315)||(4641811-4641879)
chr7 (241-277)||(34594685-34594721)
[»] scaffold0007 (5 HSPs)
scaffold0007 (164-300)||(205752-205886)
scaffold0007 (241-300)||(205053-205112)
scaffold0007 (241-300)||(205482-205541)
scaffold0007 (164-229)||(210790-210856)
scaffold0007 (243-315)||(64672-64745)
[»] chr8 (17 HSPs)
chr8 (243-317)||(13225004-13225079)
chr8 (243-317)||(11656822-11656897)
chr8 (243-317)||(12572216-12572291)
chr8 (243-317)||(33743026-33743101)
chr8 (243-317)||(41681499-41681574)
chr8 (243-316)||(9929014-9929088)
chr8 (242-300)||(18805266-18805324)
chr8 (243-317)||(33328505-33328580)
chr8 (243-316)||(19176395-19176469)
chr8 (242-298)||(5730920-5730977)
chr8 (253-317)||(9177747-9177812)
chr8 (164-230)||(28876930-28876997)
chr8 (164-226)||(42035799-42035862)
chr8 (243-317)||(44831352-44831427)
chr8 (242-280)||(28877294-28877332)
chr8 (164-217)||(7911082-7911135)
chr8 (257-297)||(18049978-18050018)
[»] scaffold0417 (1 HSPs)
scaffold0417 (243-316)||(10989-11063)
[»] scaffold0108 (2 HSPs)
scaffold0108 (164-278)||(15505-15617)
scaffold0108 (164-212)||(15140-15188)
[»] scaffold0951 (1 HSPs)
scaffold0951 (243-317)||(2032-2107)
[»] scaffold0157 (1 HSPs)
scaffold0157 (243-317)||(16861-16936)
[»] scaffold0021 (2 HSPs)
scaffold0021 (164-229)||(159334-159400)
scaffold0021 (164-217)||(159046-159099)
[»] scaffold1432 (1 HSPs)
scaffold1432 (164-212)||(536-584)
[»] scaffold0295 (1 HSPs)
scaffold0295 (254-324)||(5153-5224)
[»] scaffold1223 (1 HSPs)
scaffold1223 (248-300)||(1123-1176)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 164 - 317
Target Start/End: Original strand, 10721813 - 10721964
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||||||||||||||||||| || | ||||||||||||| ||||||||| ||||||||||||          |||||||||||||||||||||||    
T  10721813 ttttgaccagctcacgaaaatggtcttgtctctttcaaatcgaacaaaatcgtcctaaactatcatgttttttgc--agttttagtcctacctcctattt 10721910  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  10721911 tcaactccagaaacgtagagaaatgacagttttaggcagttttagacctacccc 10721964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 41834578 - 41834422
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||||||||||||||||||||||||||| |||||| |||||| |||| |||| ||||||||||||          |||||||||||||||||||||||    
T  41834578 ttttgaccagctcacgaaaatggtcctgcctctttcagatcgaacaaaaccgtcctaaactatcatgtttttttgc-agttttagtcctacctcctattt 41834480  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctat 321  Q
    |||||||  |||||| ||||||||  |||||||||||| ||||||||||| |||||||    
T  41834479 tcaactcttgaaacgcagagaaatgacagttttagacaattttagacctagcccctat 41834422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 28494871 - 28495029
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||||||| ||| ||||||||| ||||| ||||||||||||| ||||  ||| ||||||||||||          |||||||||||||||||||||||    
T  28494871 ttttgaccagttcaggaaaatggttctgcctctttcaaatcgaacaaaactgtcctaaactatcatgttttttgc--agttttagtcctacctcctattt 28494968  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    ||||||||||||||| |||||| |  || ||||||  ||||||||||||||| ||||||||    
T  28494969 tcaactccagaaacgcagagaagtgacaattttaggtagttttagacctaccacctatgct 28495029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 16753089 - 16752930
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||  ||| | || |||| |||||||          |||||||| |||| |||||||||    
T  16753089 ttttgaccaactcacgaaaatggttctgcctctttcaaatcgaacgaaaccatcctaaattatcatgttttttttgcagttttagacctaactcctattt 16752990  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    ||||||||||||||| ||| |||| |||||||||| ||| ||||||||||||| |||||||    
T  16752989 tcaactccagaaacgcagaaaaatggcagttttaggcag-tttagacctacccgctatgct 16752930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 27307163 - 27307246
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||  ||||||||| ||||||||||||||||| |||||||    
T  27307163 agttttagtcttacctcctattttcaactccagaaacgcatagaaatgacagttttaggcagttttagacctacccgctatgct 27307246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 315
Target Start/End: Original strand, 13557019 - 13557168
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||||||||||||||||||| |||| |||||||||| || ||||||||| ||||||||||||          |||||||||||||| || |||||    
T  13557019 ttttgaccagctcacgaaaatggtcatgcctctttcaaatcaaacaaaatcgtcttaaactatcatg--ttttttgcagttttagtcctacatcttattt 13557116  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctacc 315  Q
    | |||| |||||||| |||||||| ||| ||| |  | ||||||||||||||    
T  13557117 tgaactgcagaaacgcagagaaattgcaatttgatgccgttttagacctacc 13557168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 19359576 - 19359501
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  19359576 ttttcgtcctacctcctattttcaaactccagaaacgtagagaaatggcagttttaggcggttttagacctacccc 19359501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 14215346 - 14215421
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  14215346 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 14215421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 32305845 - 32305979
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||| |||||||||||||| || || || |||| |||||||| |||||||||  ||||||||||||          ||||||||||||||||| ||||    
T  32305845 ttttgatcagctcacgaaaattgttctacctcttttaaatcgaacaaaatcgtccctaaactatcatgtttttgc---agttttagtcctacctcttatt 32305941  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||  ||||||||  |||||||||||    
T  32305942 ttcaactccagaaacacagagaaatgacagttttagac 32305979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 5819034 - 5819109
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||| |||||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  5819034 ttttcgtcttacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 5819109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 16019027 - 16018952
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||  ||||||||||| |||||||| |||||||    
T  16019027 ttttcgtcctacctcctatttttaaactccagaaacgcagagaaatgacagttttagacggttttagatctacccc 16018952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 22651830 - 22651767
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactat 226  Q
    |||||||||||||||||||||||| |||||  |||||||||||| |||||||| ||||||||||    
T  22651830 ttttgaccagctcacgaaaatggttctgcctttttcaaatcgaacaaaatcgtccataaactat 22651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 27307579 - 27307455
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc-ataaactatcatgnnnnnnnnnn-agttttagtcctacctcctat 261  Q
    |||||||||| ||||||||||||| || || ||||||||||||| |||| |||| ||||||||| |||           |||||||||||||||||||||    
T  27307579 ttttgaccagttcacgaaaatggttctccctctttcaaatcgaacaaaaccgtccataaactat-atgtttttttttgtagttttagtcctacctcctat 27307481  T
Q  262 tttcaactccagaaacgtagagaaat 287  Q
    ||||||||||||||| | ||||||||    
T  27307480 tttcaactccagaaatgcagagaaat 27307455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 28495284 - 28495225
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||   ||||||||||    
T  28495284 agttttagtcctacctcctattttcaactccagaaccgcagagaaatgatagttttagac 28495225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 29454845 - 29454919
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||   |||||||| | |||||||||||||||    
T  29454845 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgatagttttaggcggttttagacctaccc 29454919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 24331672 - 24331741
Alignment:
Q  249 tcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    ||||| ||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  24331672 tcctagctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 24331741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 28495350 - 28495301
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaat 213  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  28495350 ttttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaat 28495301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 164295 - 164370
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  || |||||  | ||||||||||||||||    
T  164295 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacaattttatgcggttttagacctacccc 164370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 2864859 - 2864934
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||||  ||||||||| | |||||||| |||||||    
T  2864859 ttttcgtcctacctcctattttcaaactccataaacgcagagaaatgacagttttaggcggttttagaactacccc 2864934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 8461371 - 8461296
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||| |||||||||||||||| ||||||||||| ||||||||  || |||||| | ||||||||||||||||    
T  8461371 ttttcgtcatacctcctattttcaaactccagaaacgcagagaaatgacaattttaggcggttttagacctacccc 8461296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 16752609 - 16752672
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactat 226  Q
    |||||||||||||||||||||| || |||  ||||||||||||| |||||||| ||||||||||    
T  16752609 ttttgaccagctcacgaaaatgatcatgcttctttcaaatcgaacaaaatcgtccataaactat 16752672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 18183075 - 18183150
Alignment:
Q  243 ttttagtcctacctcctattttca-actccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||||||||||||||||| | || ||||||||| ||||||||  ||||||||| ||||||||| ||||||||    
T  18183075 ttttcgtcctacctcctatttttataccccagaaacgcagagaaatgacagttttaggcagttttaggcctacccc 18183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 20266434 - 20266367
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatg 230  Q
    |||||||||||| |||||||||||| || | ||||||||||||| |||||||| | ||||||||||||    
T  20266434 ttttgaccagcttacgaaaatggtcatgtctctttcaaatcgaacaaaatcgtccctaaactatcatg 20266367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 25000529 - 25000454
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||| ||||||||||||||| ||||| ||||| ||||||||  ||||||||||| |||||||| |||||||    
T  25000529 ttttcgtcccacctcctattttcaaactccaaaaacgcagagaaatgacagttttagacggttttagatctacccc 25000454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 15709409 - 15709335
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||||| || || ||||||||  ||||||||| | |||||||||||||||    
T  15709409 ttttcgtcctacctcctattttcaaactccataagcgcagagaaatgacagttttaggcggttttagacctaccc 15709335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 22651447 - 22651505
Alignment:
Q  241 agttttagtcctacctcct-attttcaactccagaaacgtagagaaatagcagttttag 298  Q
    ||||||||||||||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  22651447 agttttagtcctacctccttattttcaactccagaaacgcacaaaaatggcagttttag 22651505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 15115611 - 15115558
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||||| || |||| |||||||| |||||||||    
T  15115611 ttttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtc 15115558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 8647878 - 8647803
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||| ||||| |||||||||| ||||| ||||| ||||||||  ||||||||| | ||||||||||||||||    
T  8647878 ttttcgtcataccttctattttcaaactccataaacgcagagaaatgacagttttaggcggttttagacctacccc 8647803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 14340851 - 14340793
Alignment:
Q  241 agttttagtcctacctcct-attttcaactccagaaacgtagagaaatagcagttttag 298  Q
    ||||||||||||| ||||| |||| |||||||| ||||||||||||||  |||||||||    
T  14340851 agttttagtcctatctccttatttccaactccaaaaacgtagagaaatgacagttttag 14340793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 4966843 - 4966896
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||| || ||||| |||| |||||||| |||||||||    
T  4966843 ttttgaccaactcacgaaaatagtactgcctcttttaaatcgaacaaaatcgtc 4966896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 38900671 - 38900724
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| |||||||||||| |||| || |||| |||||||| |||||||||    
T  38900671 ttttgaccaactcacgaaaatgatcctacctcttttaaatcgaacaaaatcgtc 38900724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 32836034 - 32836187
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||| |||| |||| ||||||||||||          ||||||||| |||||||||||||    
T  32836034 ttttgaccagctcacaaaaacggtcctgcctctttcaaatcgaacaaaaccgtcctaaactatcatgttt-------agttttagttctacctcctattt 32836126  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    |||||||| |||||  ||||||||  |||||||||||| |||||||||||||| |||||||    
T  32836127 tcaactcctgaaacacagagaaatgacagttttagacaattttagacctaccctctatgct 32836187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 298
Target Start/End: Complemental strand, 35163706 - 35163572
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||||||||||||||||||||| ||||| |||||||||| || |||||||||  |||||||| |||          ||||||||||||||||||||||    
T  35163706 ttttgaccagctcacgaaaatggttctgcctctttcaaatcaaacaaaatcgtccctaaactat-atgttttttttgcagttttagtcctacctcctatt 35163608  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttag 298  Q
    |||||||||| ||||  ||||||||  |||||||||    
T  35163607 ttcaactccaaaaacacagagaaatgacagttttag 35163572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 32836515 - 32836381
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| |||| ||| | |||||| | |||          |||||||||||||||| |||||    
T  32836515 ttttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgttcttaaactgt-atgttttttgc--agttttagtcctaccttctatt 32836419  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||| |||||||| ||||||||| |||||||||||    
T  32836418 ttcaacttcagaaacgaagagaaataacagttttagac 32836381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 31470420 - 31470495
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||| |  |||||||||||||||    
T  31470420 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatggcagttttaggcgattttagacctacccc 31470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 35163211 - 35163312
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||||||||| ||||||||| || | ||||||||||||| |||| |||| ||||||||||||          |||||||||||||||||||||||    
T  35163211 ttttgaccagctcacaaaaatggtcttgtctctttcaaatcgaacaaaaccgtcctaaactatcatg--ttttttgcagttttagtcctacctcctattt 35163308  T
Q  264 tcaa 267  Q
    ||||    
T  35163309 tcaa 35163312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 20741541 - 20741466
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  || |||||| | ||||||||||||||||    
T  20741541 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacaattttaggcggttttagacctacccc 20741466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 11445427 - 11445352
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||| ||||| ||||||| ||||||||  ||||||||| | |||||||||| |||||    
T  11445427 ttttcgtcctacctcctattttcaaactctagaaacgcagagaaatgacagttttaggcggttttagacccacccc 11445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 18257577 - 18257502
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||| ||||||| ||||||| | ||||||||||||  ||||||||| | ||||||||||||||||    
T  18257577 ttttcgtcctacctcatattttccaactccatacacgtagagaaatgacagttttaggcggttttagacctacccc 18257502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 18505024 - 18505099
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||| ||||| ||||||||||  ||||||||| |  |||||||||||||||    
T  18505024 ttttcgtcctacctcctattttcaaactctagaaatgtagagaaatgacagttttaggcgattttagacctacccc 18505099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 22219785 - 22219718
Alignment:
Q  251 ctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    ||||||||||||||||| ||||||||||  ||||||||  ||||||||| | ||||||||||||||||    
T  22219785 ctacctcctattttcaaactccagaaactcagagaaatgacagttttaggcggttttagacctacccc 22219718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 10900044 - 10900102
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagac 300  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  |||||||||||    
T  10900044 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttagac 10900102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 22534172 - 22534209
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacg 278  Q
    |||||||||||||||||||||||||||||||| |||||    
T  22534172 agttttagtcctacctcctattttcaactccaaaaacg 22534209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 12935262 - 12935329
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttaga 309  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||||  ||||||||| | ||||||||    
T  12935262 ttttcgtcctacctcctattttcaaactccataaacgcagagaaatgacagttttaggcggttttaga 12935329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 835737 - 835695
Alignment:
Q  171 cagctcacgaaaatggtcctgccgctttcaaatcgaataaaat 213  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||    
T  835737 cagcttacgaaaatggtcctgcctctttcaaatcgaacaaaat 835695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 1149558 - 1149608
Alignment:
Q  267 actccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||||||||||  ||||||||||||||||||| |  |||||||||||||||    
T  1149558 actccagaaacacagagaaatagcagttttaggcgattttagacctacccc 1149608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 23075560 - 23075494
Alignment:
Q  251 ctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||||||||||||| || ||||| ||| | ||||||||  ||||||||| |||||||||||||||||    
T  23075560 ctacctcctatttttaaactccaaaaatgcagagaaatgacagttttaggcagttttagacctaccc 23075494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 835428 - 835469
Alignment:
Q  171 cagctcacgaaaatggtcctgccgctttcaaatcgaataaaa 212  Q
    |||||||||||||||||| |||| ||||||||||||| ||||    
T  835428 cagctcacgaaaatggtcttgcctctttcaaatcgaacaaaa 835469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 11523788 - 11523825
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacg 278  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  11523788 agttttagtcctacctcatattttcaactccataaacg 11523825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 33095817 - 33095854
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacg 278  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  33095817 agttttagtcctacctcctattttcacctccaaaaacg 33095854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 11276695 - 11276751
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttag 298  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||||  |||||||||    
T  11276695 ttttcgtcctacctcctattttcaaactccaaaaacgcagagaaatgacagttttag 11276751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 15827745 - 15827824
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatg 322  Q
    |||| |||||||||||||||||| ||||||||||||| ||| ||||  || |||||| | ||||||||| |||||| ||||    
T  15827745 ttttcgtcctacctcctattttcaaactccagaaacgcagaaaaatgaca-ttttaggcggttttagacttaccccatatg 15827824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 40160609 - 40160451
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||| ||||||||||| ||| |||| ||||||||| ||| |||| |||| ||||||||||||          |||||||||| ||||||||||||    
T  40160609 ttttgaccaactcacgaaaatagtcatgcctctttcaaattgaacaaaaccgtcctaaactatcatgttttttgc--agttttagtcttacctcctattt 40160512  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||  ||||||||||||    
T  40160511 tcaactccagaaacgtagagaaaatgcagttttaggcagttttagactcaccccctatgct 40160451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 17504001 - 17504135
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||| | || |||| ||||||||||||          |||||||||||||||||||||||    
T  17504001 ttttgaccatctcacgaaaatggtcctgcctctttcaaatggaacataaccgtcctaaactatcatgttttttgc--agttttagtcctacctcctattt 17504098  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||||||||||||||||  |||||||||||    
T  17504099 tcaactccagaaacgtagagaaatgacagttttagac 17504135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 324
Target Start/End: Complemental strand, 35193813 - 35193664
Alignment:
Q  172 agctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattttcaactcc 271  Q
    |||||||||||||||||||||| |||||||||| || |||| |||| ||||||||||||           ||||||||| ||||||||||||||||||||    
T  35193813 agctcacgaaaatggtcctgcctctttcaaatctaacaaaaccgtcctaaactatcatgttttttgat--gttttagtcatacctcctattttcaactcc 35193716  T
Q  272 agaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    ||||||| |||| ||| |||||||||  |||||  |||||||||| |||||||    
T  35193715 agaaacgcagag-aatggcagttttaagcagttacagacctaccctctatgct 35193664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 2118398 - 2118480
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    |||| |||||||||||||||||||| || |||||||| |||||||| |||||||||| | ||||||||||||| |||||||||    
T  2118398 ttttcgtcctacctcctattttcaaacttcagaaacgcagagaaattgcagttttaggcggttttagacctactccctatgct 2118480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 35193335 - 35193469
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||| |||||||||||||||||||| || ||||||||||||| |||||||||  |||||||| |||          ||||||||||||| ||||||||    
T  35193335 ttttgatcagctcacgaaaatggtcctacctctttcaaatcgaacaaaatcgtccctaaactat-atgttttttgc--agttttagtcctatctcctatt 35193431  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||| |||||||| ||||||||  |||||||||||    
T  35193432 ttcaacttcagaaacgcagagaaatgacagttttagac 35193469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 22434284 - 22434359
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  22434284 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 22434359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 46193510 - 46193585
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||||| |||||||| |||||||    
T  46193510 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttagacggttttagatctacccc 46193585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 51021236 - 51021161
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| ||| |||||| | ||||||||||||||||    
T  51021236 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatggcaattttaggcggttttagacctacccc 51021161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 298
Target Start/End: Complemental strand, 24336282 - 24336149
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcg-tcataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| |||| || || |||| |||||||            ||||||||||||| | ||||    
T  24336282 ttttgacaagctcacgaaaatggtcctgcctctttcaaatcgaacaaaaccgttcctaaattatcatgttttttgctc--ttttagtcctaccccatatt 24336185  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttag 298  Q
    |||||||||||||||||| |||||| |||| |||||    
T  24336184 ttcaactccagaaacgtatagaaatggcagctttag 24336149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 54995174 - 54995248
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||  ||||||||| | |||||||||||||||    
T  54995174 ttttcgtcctacctcctattttcaaactccagaaatgtagagaaatgacagttttaggcggttttagacctaccc 54995248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 229678 - 229565
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcc-tat 261  Q
    ||||||||||||||||||||||||| |||| |||||||||| || |||||||| | ||||||||||||          ||||||| |||||||||| |||    
T  229678 ttttgaccagctcacgaaaatggtcttgcctctttcaaatcaaacaaaatcgtccttaaactatcatg---tttttgcagttttaatcctacctccttat 229582  T
Q  262 tttcaactccagaaacg 278  Q
    |||||||||||||||||    
T  229581 tttcaactccagaaacg 229565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 11153251 - 11153326
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  11153251 ttttcgtcctacctcctattttcaaaccccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 11153326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 12234769 - 12234694
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| | ||||||| | ||||||||  ||||||||| ||||||||||||||||||    
T  12234769 ttttcgtcctacctcctattttcaaaccccagaaatgcagagaaatgacagttttaggcagttttagacctacccc 12234694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 12503541 - 12503616
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||| |  |||||||||||||||    
T  12503541 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaattacagttttaggcgattttagacctacccc 12503616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 20470951 - 20470876
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||   |||||||| | ||||||||||||||||    
T  20470951 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgaaagttttaggcggttttagacctacccc 20470876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 45082864 - 45082789
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||| ||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  45082864 ttttcgtcctacctcctattttcaaactctagaaacgcagagaaatgacagttttaggcggttttagacctacccc 45082789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 25447352 - 25447426
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||||| ||||| ||||||||  || |||||| |||||||||||||||||    
T  25447352 ttttcgtcctacctcctattttcaaactccataaacgcagagaaatgacaattttaggcagttttagacctaccc 25447426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 24335788 - 24335836
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaa 212  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  24335788 ttttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaa 24335836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 229188 - 229255
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatg 230  Q
    ||||||||||||| ||||||||||| |||| ||||||||| ||| |||||||| | ||||||||||||    
T  229188 ttttgaccagctcgcgaaaatggtcttgcctctttcaaattgaacaaaatcgtccttaaactatcatg 229255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 4219999 - 4219924
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||| |||| || ||||| ||||||||| ||||||||| | |||||||||| |||||    
T  4219999 ttttcgtcctacctcctattttcaaacttcaaaaacgcagagaaataacagttttaggcggttttagacccacccc 4219924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 15523340 - 15523415
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||| ||||||| ||||||||  ||||||||  | ||||||||||||||||    
T  15523340 ttttcgtcctacctcctattttcaaactctagaaacgcagagaaatgacagttttatgcggttttagacctacccc 15523415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 18751704 - 18751779
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||| ||||||||||||||| ||||||||||| ||| |||| |||||||||| | ||||||||| ||||||    
T  18751704 ttttcgtcccacctcctattttcaaactccagaaacgcagaaaaatggcagttttaggcggttttagacttacccc 18751779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 23494883 - 23494808
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||||||| ||||||| |||| ||||||||||||| |||||| ||| |||||| | ||||||||||||||||    
T  23494883 ttttcgtcctacatcctattctcaaactccagaaacgtaaagaaatggcaattttaggcggttttagacctacccc 23494808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 40160196 - 40160255
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||  |||||||||||    
T  40160196 agttttagtcctacctcctattttcaactctataaacatggagaaatgacagttttagac 40160255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 48526621 - 48526546
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||| ||||  ||||||||  ||||||||| | ||||||||||||||||    
T  48526621 ttttcgtcctacctcctattttcaaactccataaacacagagaaatgacagttttaggcggttttagacctacccc 48526546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 25938111 - 25938038
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacc 315  Q
    |||| |||||||||||||||||||| ||||||||||  | |||||| |||||||||  | ||||||||||||||    
T  25938111 tttttgtcctacctcctattttcaaactccagaaacacaaagaaatggcagttttatgcggttttagacctacc 25938038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 10795729 - 10795685
Alignment:
Q  280 agagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||    
T  10795729 agagaaatgacagttttaggcagttttagacctaccccctatgct 10795685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 23986547 - 23986595
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaa 212  Q
    ||||||||||||||||||||||||| || | ||||||||||||| ||||    
T  23986547 ttttgaccagctcacgaaaatggtcatgtctctttcaaatcgaacaaaa 23986595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 51310024 - 51309976
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaa 212  Q
    |||| |||||||||||||||||||| |||| ||||||||||||| ||||    
T  51310024 tttttaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaa 51309976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 17504401 - 17504343
Alignment:
Q  243 ttttagtcctacctcctatttt-caactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||| |||||||||||||| |||||| ||||||| ||||||||  |||||||||||    
T  17504401 ttttagtactacctcctatttttcaactctagaaacgcagagaaatgacagttttagac 17504343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 6617181 - 6617128
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||| | ||||||||| ||||||| || |||| ||||||||||||||||||    
T  6617181 ttttgactaactcacgaaattggtcctacctcttttaaatcgaataaaatcgtc 6617128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 10795830 - 10795777
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    |||||| |||||||||||| |||||||  | ||||||||||||| |||||||||    
T  10795830 ttttgaacagctcacgaaattggtcctctctctttcaaatcgaacaaaatcgtc 10795777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 18965177 - 18965234
Alignment:
Q  174 ctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatg 230  Q
    |||||||||| |||| |||| ||||||||||||| |||||||| | ||||||||||||    
T  18965177 ctcacgaaaacggtcttgcctctttcaaatcgaacaaaatcgtccttaaactatcatg 18965234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 19528896 - 19528949
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    |||||||||  |||||||| ||||||| || |||| ||||||||||||||||||    
T  19528896 ttttgaccaattcacgaaattggtcctacctcttttaaatcgaataaaatcgtc 19528949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 45048654 - 45048497
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||||||| |||||||||||||| | || ||||| ||||||| |||| |||| ||||||||||||          |||||||||||||||||||||||    
T  45048654 ttttgaccagttcacgaaaatggtcatacctctttccaatcgaacaaaaccgtcctaaactatcatgttttttgc--agttttagtcctacctcctattt 45048557  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    ||||||||||||||| ||||||||||| | ||||  |||||||||||||||||||||||||    
T  45048556 tcaactccagaaacgcagagaaatagccg-tttatgcagttttagacctaccccctatgct 45048497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 17088173 - 17088312
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatg---nnnnnnnnnnagttttagtcctacctccta 260  Q
    ||||||||||||||||||||||||  |||| ||||||||||||| |||| |||| ||||||||||||             | ||||||||||||||||||    
T  17088173 ttttgaccagctcacgaaaatggttttgcctctttcaaatcgaacaaaaccgtcctaaactatcatgtttttttttttgcaattttagtcctacctccta 17088272  T
Q  261 ttttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||| |||||| | |||||||| ||||||||||||    
T  17088273 ttttcaacttcagaaatgcagagaaatggcagttttagac 17088312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 298
Target Start/End: Original strand, 44291328 - 44291462
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||| ||||||||||||||          |||||||||| |||||||| ||    
T  44291328 ttttgaccagctcacgaaaatggttatgcctctttcaaattgaacaaaatcgtccataaactatcatgttttttttgcagttttagtcatacctcctgtt 44291427  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttag 298  Q
    ||||| |||||||||| | | |||||||||||||||    
T  44291428 ttcaaatccagaaacgcaca-aaatagcagttttag 44291462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 17433655 - 17433580
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| || |||||||| ||||||||  ||||||||||| ||||||||||||||||    
T  17433655 ttttcgtcctacctcctattttcaaacttcagaaacgcagagaaatgacagttttagacggttttagacctacccc 17433580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 45048257 - 45048316
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||    
T  45048257 agttttagtcctacctcatattttcaactccagaaacgcatagaaataacagttttagac 45048316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 294
Target Start/End: Complemental strand, 44291830 - 44291701
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||||||||||| |||||||||| || | |||| |||||||||||||||||||   ||||||||||          ||||||||||||||| ||||||    
T  44291830 ttttgaccagctcatgaaaatggtcatgtctcttttaaatcgaataaaatcgtcacctaactatcatg--ttttttgcagttttagtcctaccccctatt 44291733  T
Q  263 ttcaactccagaaacgtagagaaatagcagtt 294  Q
    |||||||||||||||  | |||||| ||||||    
T  44291732 ttcaactccagaaacacatagaaatggcagtt 44291701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 5539921 - 5539996
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||| ||||| | |||||| |||||||||| | ||||||||||||||||    
T  5539921 ttttcgtcctacctcctattttcaaactccataaacgcatagaaatggcagttttaggcggttttagacctacccc 5539996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 9833670 - 9833538
Alignment:
Q  165 tttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||||| ||||||||||| ||| |||| ||||||||||||| |||||||||  |||| ||| |||          ||||||||||||||| |||||||    
T  9833670 tttgaccaactcacgaaaatagtcatgcctctttcaaatcgaacaaaatcgtccctaaaatattatgttttttgc--agttttagtcctaccccctattt 9833573  T
Q  264 tcaactccagaaacgtagagaaatagcagttttag 298  Q
    ||||||||||||||| | ||||||| || ||||||    
T  9833572 tcaactccagaaacgcacagaaataacatttttag 9833538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 44802690 - 44802578
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||||||||||||| ||||| |||| ||||||||  ||| |||||||||  ||||||||||||          ||||||||| ||||||||||||    
T  44802690 ttttgaccagctcacgaaagtggtcatgcctctttcaaacggaacaaaatcgtccctaaactatcatgttttttgc--agttttagttctacctcctatt 44802593  T
Q  263 ttcaactccagaaac 277  Q
    |||||||||||||||    
T  44802592 ttcaactccagaaac 44802578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 23526685 - 23526735
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatc 214  Q
    |||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  23526685 ttttgaccagctcacgaaaatggtcctgcctcttttaaatcgaacaaaatc 23526735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 33144027 - 33144097
Alignment:
Q  248 gtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||||||||||||||||||| ||| ||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  33144027 gtcctacctcctattttcaaactctagaaacgcagagaaatgacagttttaggcggttttagacctacccc 33144097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 39485092 - 39485226
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||| ||||||||||||||||||| || ||||||||||||| |||||||| | |||||||| |||          ||||||||||||| ||||||||    
T  39485092 ttttgactagctcacgaaaatggtcctacctctttcaaatcgaacaaaatcgtccctaaactat-atg--ttttttgcagttttagtcctatctcctatt 39485188  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||| |||||||  ||||| ||  |||||||||||    
T  39485189 ttcaacttcagaaacacagagagatgacagttttagac 39485226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 21856153 - 21856222
Alignment:
Q  249 tcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    ||||| ||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  21856153 tcctagctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 21856222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 29021384 - 29021331
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    |||||||||||||||||||||| || |||| ||||||||||||| |||||||||    
T  29021384 ttttgaccagctcacgaaaatgttcatgcctctttcaaatcgaacaaaatcgtc 29021331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 25274783 - 25274831
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaa 212  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  25274783 ttttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaa 25274831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 15173534 - 15173459
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||| | ||||| ||||||||  ||||||||| | ||||||||||||||||    
T  15173534 ttttcgtcctacctcctattttcaaactctataaacgcagagaaatgacagttttaggcggttttagacctacccc 15173459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 17088583 - 17088524
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||||  |||||||||||    
T  17088583 agttttagttctacctcctattttcaaatctagaaacgcagagaaatgacagttttagac 17088524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 17112386 - 17112461
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||| ||||   |||||||| | ||||||||||||||||    
T  17112386 ttttcgtcctacctcctattttcaaactccagaaacgcagaaaaatgatagttttaggcggttttagacctacccc 17112461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 18984559 - 18984484
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||| ||||||  |||||||| |||||||||| | ||||||||||| ||||    
T  18984559 ttttcgtcctacctcctattttcaaactctagaaacacagagaaatggcagttttaggcggttttagaccttcccc 18984484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 39154460 - 39154385
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| || |||||||| ||||||||  || |||||| | ||||||||||||||||    
T  39154460 ttttcgtcctacctcctattttcaaacttcagaaacgcagagaaatgacaattttaggcggttttagacctacccc 39154385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 50970383 - 50970458
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||||||||| |||||||||| ||||||||||| ||||||||  ||||||| | | ||||||||||||||||    
T  50970383 ttttcgtcctaccttctattttcaaactccagaaacgcagagaaatgacagtttttggcggttttagacctacccc 50970458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 9019403 - 9019345
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagac 300  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||||| |||||||||||    
T  9019403 ttttcgtcctacctcctattttcaaaccccagaaacgcagagaaataacagttttagac 9019345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 29307382 - 29307324
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagac 300  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  |||||||||||    
T  29307382 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttagac 29307324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 29870059 - 29869985
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||  ||||||| ||||||||  ||||||||| | |||||||||||||||    
T  29870059 ttttcgtcctacctcctattttcaaactttagaaacgcagagaaatgacagttttaggcggttttagacctaccc 29869985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 50926760 - 50926694
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcat 229  Q
    |||||||||||||||||||||||||| | | ||||||||||||| |||| ||| | |||||||||||    
T  50926760 ttttgaccagctcacgaaaatggtcccgtctctttcaaatcgaacaaaaccgtccctaaactatcat 50926694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 277
Target Start/End: Original strand, 50926257 - 50926371
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcc-tacctcctat 261  Q
    |||||||||||||||||||||  || | || ||||||||||||| |||||||| | |||||||||||           ||||||||||| ||||||||||    
T  50926257 ttttgaccagctcacgaaaataatcatacctctttcaaatcgaacaaaatcgtccctaaactatcat-ttttttttgcagttttagtccttacctcctat 50926355  T
Q  262 tttcaactccagaaac 277  Q
    ||||||||||||||||    
T  50926356 tttcaactccagaaac 50926371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 15646297 - 15646372
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||| ||||||||| ||||| ||| | ||||||||  ||||||||| | ||||||||||||||||    
T  15646297 ttttcgtcctacctcatattttcaaactccataaatgcagagaaatgacagttttaggcggttttagacctacccc 15646372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 48173775 - 48173826
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcg 215  Q
    |||||||||| |||| |||||||| ||||| ||||||||||||| |||||||    
T  48173775 ttttgaccagttcacaaaaatggttctgcctctttcaaatcgaacaaaatcg 48173826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 26859164 - 26859246
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    |||| |||||||||| ||||||||| ||||||||||| |||||| ||  |||||||| | ||||||||| ||| || ||||||    
T  26859164 ttttcgtcctacctcatattttcaaactccagaaacgcagagaagtaatagttttaggcggttttagacatactccatatgct 26859246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 2868227 - 2868174
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| | ||||||||||||||| || |||| |||||||| |||||||||    
T  2868227 ttttgaccaacacacgaaaatggtcctacctcttttaaatcgaacaaaatcgtc 2868174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 17088658 - 17088605
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    |||||| |||||||||||||||||| |||| |||||||||| || |||| ||||    
T  17088658 ttttgaacagctcacgaaaatggtcatgcctctttcaaatcaaacaaaaccgtc 17088605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 17641888 - 17641835
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||| | || |||| |||||||| |||||||||    
T  17641888 ttttgaccaactcacgaaaatggtcatacctcttttaaatcgaacaaaatcgtc 17641835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 29021307 - 29021270
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacg 278  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  29021307 agttttagtcttaccccctattttcaactccagaaacg 29021270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 48174158 - 48174121
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacg 278  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  48174158 agttttagtcccaccccctattttcaactccagaaacg 48174121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 50304466 - 50304519
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||| | || |||| |||||||| |||||||||    
T  50304466 ttttgaccaactcacgaaaatggtcatacctcttttaaatcgaacaaaatcgtc 50304519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 28143548 - 28143414
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||          |||||||||||||| |||||||    
T  28143548 ttttgaccagctcacgaaaatggtcctgcctctttcaaatcgaacaaaatcgtccctaaactatcatg---tttttgcagttttagtcctacgtcctatt 28143452  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||| ||||||||  |||||||||||    
T  28143451 ttcaactccagaaacgcagagaaatgacagttttagac 28143414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 14942365 - 14942228
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc-ataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||||||||||||||||||| || | ||||||||||||| ||||| ||| ||||| |||||||          |||||||||||||| |||||||    
T  14942365 ttttgaccagctcacgaaaatggtcttgtctctttcaaatcgaacaaaattgtccataaattatcatgttttttttgcagttttagtcctacatcctatt 14942266  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||| | |||||||| ||||||||||||    
T  14942265 ttcaactccagaaatgcagagaaatcgcagttttagac 14942228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 18450935 - 18451010
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  18450935 ttttagtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 18451010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 43058773 - 43058698
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||| | ||||||||||||||||    
T  43058773 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatggcagttttaggcggttttagacctacccc 43058698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 31797296 - 31797166
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| |||| ||||  |||||||| |||          ||||||||||||||||||||||    
T  31797296 ttttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgtccctaaactat-atgttttttgc--agttttagtcctacctcctatt 31797200  T
Q  263 ttcaactccagaaacgtagagaaatagcagtttt 296  Q
    |||||||| ||||||| ||||||||  |||||||    
T  31797199 ttcaactctagaaacgcagagaaatgacagtttt 31797166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 28617054 - 28616979
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |  |||||||||||||||    
T  28617054 ttttcgtcttacctcctattttcaaactccagaaacgcagagaaatagcagttttaggcgattttagacctacccc 28616979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 239792 - 239721
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagaccta 313  Q
    |||| ||| |||||||||||||||| ||||||||||| |||||||| |||||||||| | ||||||||||||    
T  239792 ttttcgtcatacctcctattttcaaactccagaaacgcagagaaatggcagttttaggcggttttagaccta 239721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 40815450 - 40815525
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  40815450 ttttcgtcctacctcctatttttaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 40815525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 40027580 - 40027506
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||||| ||||| || ||||| |||||||||| | |||||||||||||||    
T  40027580 ttttcgtcctacctcctattttcaaactccataaacgcagtgaaatggcagttttaggcggttttagacctaccc 40027506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 2190595 - 2190542
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||||||||||||| ||||||||||  |||||||||||| |||||||||    
T  2190595 ttttgaccagctcacgaaattggtcctgcctttttcaaatcgaacaaaatcgtc 2190542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 7446786 - 7446714
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctac 314  Q
    |||| |||||||||||||||||||| ||||| ||||| ||||||||  ||||||||| | |||||||||||||    
T  7446786 ttttcgtcctacctcctattttcaaactccaaaaacgcagagaaatgacagttttaggcggttttagacctac 7446714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 11540157 - 11540094
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactat 226  Q
    ||||||||| ||||||||||||||||| || |||| |||||||| |||||||| ||||||||||    
T  11540157 ttttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtccataaactat 11540094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 8425459 - 8425533
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||||  ||||||||  | |||||||||||||||    
T  8425459 ttttcgtcctacctcctattttcaaactccagaaatgcagagaaatgacagttttaagcggttttagacctaccc 8425533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 42192267 - 42192320
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||||| || |||| |||||||| |||||||||    
T  42192267 ttttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtc 42192320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 42192762 - 42192709
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||||| || |||| |||||||| |||||||||    
T  42192762 ttttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtc 42192709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 22374765 - 22374690
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||| ||||| ||||| | ||||||||  ||||||||| | ||||||||||| ||||    
T  22374765 ttttcgtcctacctcctattttcaaactctagaaatgcagagaaatgacagttttaggcggttttagaccttcccc 22374690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 3025903 - 3025829
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||| ||||||||||| | ||||||||  ||||||||  | | |||||||||||||    
T  3025903 ttttcgtcctacctcctattttcaaactccagaaatgcagagaaatgacagttttaagcgggtttagacctaccc 3025829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 11090960 - 11090886
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||| ||||||||||||| ||||||||||| ||| ||||  || |||||| | |||||||||||||||    
T  11090960 ttttcgtcctatctcctattttcaaactccagaaacgcagataaatgacaattttaggcggttttagacctaccc 11090886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 33920714 - 33920772
Alignment:
Q  241 agttttagtcctacctcc-tattttcaactccagaaacgtagagaaatagcagttttag 298  Q
    ||||||||||||| |||| |||||||||||||||||||| | ||||||  |||||||||    
T  33920714 agttttagtcctatctccctattttcaactccagaaacgcatagaaatgacagttttag 33920772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 62984 - 63037
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||||| ||  ||| |||||||| |||||||||    
T  62984 ttttgaccaactcacgaaaatggtcctacctttttaaaatcgaacaaaatcgtc 63037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 1978549 - 1978476
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacc 315  Q
    |||| |||||||||||||||||| ||||| ||||||  | |||||| |||||||||  | ||||||||||||||    
T  1978549 tttttgtcctacctcctattttcaaactctagaaacacaaagaaatggcagttttatgcggttttagacctacc 1978476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 14432575 - 14432507
Alignment:
Q  249 tcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    ||||||||||||||||||| ||| ||||||| ||||||||  ||||||||| |   |||||||||||||    
T  14432575 tcctacctcctattttcaaactctagaaacgcagagaaatgacagttttaggcgaatttagacctaccc 14432507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 316
Target Start/End: Original strand, 50900559 - 50900710
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||| ||||||||||||||||||||  | ||||||||||||| |||| |||| ||||||||||||          |||||||||||||||| ||||||    
T  50900559 ttttgatcagctcacgaaaatggtcctaactctttcaaatcgaacaaaaccgtcctaaactatcatgttttttcgc-agttttagtcctaccttctattt 50900657  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    ||||||| |||||| |||||||||  ||||||||| |||||||||||||||||    
T  50900658 tcaactctagaaacatagagaaatgacagttttaggcagttttagacctaccc 50900710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 37076193 - 37076034
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctccta-tt 262  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||          | |||||||| ||||| ||| ||    
T  37076193 ttttgatcagctcacgaaaatggtcccgcctctttcaaatcgaacaaaatcgtcctaaactatcatg--ttttttacatttttagtcttaccttctattt 37076096  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    || ||||| |||||||||||||||| |||||||||| ||||||||||| || ||||||||||    
T  37076095 tttaactctagaaacgtagagaaatggcagttttaggcagttttagacttatcccctatgct 37076034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 27200210 - 27200076
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| || | |||| ||||||||||||          |||||||||| ||||||||||||    
T  27200210 ttttgaccagctcacgaaaatggttctgcctctttcaaatcgaacaataccgtcctaaactatcatg--ttttttgcagttttagtcatacctcctattt 27200113  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||||||| ||||||||  ||| |||||||    
T  27200112 tcaactccagaaacgcagagaaatgacaggtttagac 27200076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 8873717 - 8873876
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||| ||| | |||||||||||| || | |||| |||||||| |||| |||||||| ||||||||          |||||||||| ||||||||||||    
T  8873717 ttttgatcagtttacgaaaatggtcatgtctcttttaaatcgaacaaaaccgtcataacctatcatgtttttttgc-agttttagtcttacctcctattt 8873815  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    |||||| |||||||| ||||||||  ||||||||| || |||| |||||||||||||||||    
T  8873816 tcaacttcagaaacgcagagaaatgacagttttaggcaattttggacctaccccctatgct 8873876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 36701615 - 36701480
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||||||||||||||||||| || | ||||||||||||| |||||| ||  ||||||||||||          |||||||||| |||||||||||    
T  36701615 ttttgaccagctcacgaaaatggtcatgtctctttcaaatcgaacaaaatcatccctaaactatcatgttttttgc--agttttagtcatacctcctatt 36701518  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||  | |||||| ||||||||||||    
T  36701517 ttcaactccagaaacacatagaaatggcagttttagac 36701480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 55192145 - 55192279
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc-ataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||||||||||||||||||||||  ||| |||||||||| || |||| |||| ||||||||| |||          ||||||||||||||||||||||    
T  55192145 ttttgaccagctcacgaaaatggtctcgcctctttcaaatcaaacaaaaccgtccataaactat-atgttttttgt--agttttagtcctacctcctatt 55192241  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||| ||||||||  |||||||||||    
T  55192242 ttcaactccagaaacgcagagaaatgacagttttagac 55192279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 27199729 - 27199864
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| |||| ||||| |||||||| |||          ||||||||| |||| |||||||    
T  27199729 ttttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgtcactaaactat-atg-tttttttgcagttttagtgctacatcctatt 27199826  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||| ||||||| ||| ||||| |||||||||||    
T  27199827 ttcaactctagaaacgcagataaatatcagttttagac 27199864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 41047139 - 41047065
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||| | |||||||||||||||    
T  41047139 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatggcagttttaggcggttttagacctaccc 41047065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 5137421 - 5137345
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccccc 318  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||  ||||||||| | |||||||||||||||||    
T  5137421 ttttagtcctatctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctaccccc 5137345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 4275804 - 4275729
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||||| | ||||||||||||||||    
T  4275804 ttttcgtcctacctcctattttcaaactccataaacgcagagaaatggcagttttaggcggttttagacctacccc 4275729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 37727370 - 37727295
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  37727370 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 37727295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 43973880 - 43973805
Alignment:
Q  243 ttttagtcctacctcctattttca-actccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||||||||||||||||||| || ||||||||| ||||||||  ||||||||| ||||||||||||||||||    
T  43973880 ttttcgtcctacctcctattttcataccccagaaacgcagagaaatgacagttttaggcagttttagacctacccc 43973805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 31778758 - 31778832
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||| | |||||||||||||||    
T  31778758 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctaccc 31778832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 49408300 - 49408167
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||| ||||||||||||||  || | ||||||||||||| ||||  ||| ||||||||||||          |||||||||||||||||  ||||    
T  49408300 ttttgaccatctcacgaaaatggttgtgtctctttcaaatcgaacaaaactgtcctaaactatcatgtttttttgc-agttttagtcctacctc--attt 49408204  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||||||| | |||||| ||||||||||||    
T  49408203 tcaactccagaaacgcaaagaaatggcagttttagac 49408167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 26837465 - 26837538
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacc 315  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||    
T  26837465 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacc 26837538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 17464596 - 17464671
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||  ||||||||| | || |||||||||||||    
T  17464596 ttttcgtcctacctcctattttcaaactccagaaacgtaaagaaatgacagttttaggcggtgttagacctacccc 17464671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 22424919 - 22424994
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||||  ||||||||| | ||||||||||||||||    
T  22424919 ttttcgtcctacctcctattttcaaactccagaaatgcagagaaatgacagttttaggcggttttagacctacccc 22424994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 25853347 - 25853410
Alignment:
Q  251 ctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagaccta 313  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  25853347 ctacctcctattttcaaactccagaaacgcagagaaataacagttttaggcggttttagaccta 25853410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 27393766 - 27393841
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||| ||||||||||| | ||||||||| ||||||||  ||||||||| ||||||||||||||||||    
T  27393766 ttttcgtcctaccccctattttcaaaccccagaaacgcagagaaatgacagttttaggcagttttagacctacccc 27393841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 36701133 - 36701270
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||| || |||||||||||| || |||| ||||||||||||| |||||||| ||||||||||||||           ||||||||  | |||||||||    
T  36701133 ttttgatcaactcacgaaaatgatcatgcctctttcaaatcgaacaaaatcgtccataaactatcatgttttttttacggttttagttatccctcctatt 36701232  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||| ||| ||||  || ||||||||    
T  36701233 ttcaactccagaaacgcagataaatgacaattttagac 36701270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 37075791 - 37075850
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||  | |||||||||    
T  37075791 agttttagtcctacctcttattttcaactccagaaacgcagagaaatgaccgttttagac 37075850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 2323483 - 2323553
Alignment:
Q  243 ttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagacagttttagaccta 313  Q
    |||||||||||||||||||||||||||||||||||   || ||||  ||||||||| || |||||||||||    
T  2323483 ttttagtcctacctcctattttcaactccagaaacacggataaatgacagttttaggcaattttagaccta 2323553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 24300661 - 24300735
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||| ||||||||||||||| ||||||||||| ||||||||  ||||||||| | |||||||||||||||    
T  24300661 ttttcgtcccacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctaccc 24300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 39555691 - 39555757
Alignment:
Q  251 ctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    ||||||||||||||||| ||||||||||| ||||||||  ||||||||| | |||||||||||||||    
T  39555691 ctacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctaccc 39555757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 50900971 - 50900913
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttaga 299  Q
    |||||| ||||||||||||||||||||||||| ||||| | |||||| |||||||||||    
T  50900971 agtttttgtcctacctcctattttcaactccataaacgcaaagaaattgcagttttaga 50900913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 29801856 - 29801783
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacc 315  Q
    |||| |||| ||||||||||||||| ||||||||||| ||||||||  || |||||||| ||||||||||||||    
T  29801856 ttttcgtcccacctcctattttcaaactccagaaacgcagagaaatgacaattttagacggttttagacctacc 29801783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 23644899 - 23644823
Alignment:
Q  249 tcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    ||||||||||||||||||| ||| || |||| ||||||||  ||||||||| | |||||||||||| ||||||||||    
T  23644899 tcctacctcctattttcaaactctagtaacgcagagaaatgacagttttaggcggttttagacctaacccctatgct 23644823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 8874205 - 8874070
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||||||||||||||||||||||||||  |||| |||||||| |||| | | | |||||||| |||          ||||||||| |||||| |||||    
T  8874205 ttttgaccagctcacgaaaatggtcctgcttcttttaaatcgaacaaaaccttccctaaactat-atgttttttttgcagttttagttctaccttctatt 8874107  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||| | ||||||  |||||||||||    
T  8874106 ttcaactccagaaacgca-agaaatgacagttttagac 8874070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 20841001 - 20840934
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttaga 309  Q
    |||| |||||||||||||||||| ||||||| ||||| |||||||| |||||||||| | ||||||||    
T  20841001 ttttcgtcctacctcctattttcaaactccataaacgcagagaaatggcagttttaggcggttttaga 20840934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 49407898 - 49407957
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||  || ||||||||    
T  49407898 agttttagtcatacctcctattttcaactccaaaaacgcagagaaatgacaattttagac 49407957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 52237336 - 52237283
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||||| || |||| |||||||| |||||||||    
T  52237336 ttttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtc 52237283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 26274672 - 26274744
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctac 314  Q
    |||| ||| |||||||||||||||| ||||||||||| ||  ||||  ||||||||| |||||||||||||||    
T  26274672 ttttcgtcatacctcctattttcaaactccagaaacgcagttaaatgacagttttaggcagttttagacctac 26274744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 37075713 - 37075753
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatc 204  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  37075713 ttttgaccaactcacgaaaatggtcctgcctctttcaaatc 37075753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 49407823 - 49407871
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaa 212  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||| ||||    
T  49407823 ttttgaccagctcacgaaaatggtcatgcctctttcaaatagaacaaaa 49407871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 37847263 - 37847204
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||||| ||||||||||||||| |||||| | ||||||||  || ||||||||    
T  37847263 agttttagtcctatctcctattttcaacttcagaaatgcagagaaatgacaattttagac 37847204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 52375850 - 52375787
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactat 226  Q
    ||||||||| ||||||||||||||||| || |||| |||| ||| |||||||| ||||||||||    
T  52375850 ttttgaccaactcacgaaaatggtcctacctcttttaaattgaacaaaatcgtccataaactat 52375787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 30513749 - 30513811
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactat 226  Q
    ||||||| | |||||||||||||||||  |  ||| |||||||||||||||||| ||||||||    
T  30513749 ttttgacaaactcacgaaaatggtcctatcttttttaaatcgaataaaatcgtcttaaactat 30513811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 50662856 - 50662798
Alignment:
Q  241 agttttagtcctacctcc-tattttcaactccagaaacgtagagaaatagcagttttag 298  Q
    ||||||||||||| |||| |||||||||||||||||||| | ||||||  |||||||||    
T  50662856 agttttagtcctagctccctattttcaactccagaaacgcacagaaatgacagttttag 50662798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 33412673 - 33412620
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    |||||| ||||||||||||||||| ||| | ||||| ||||||| |||||||||    
T  33412673 ttttgatcagctcacgaaaatggttctgtctctttcgaatcgaacaaaatcgtc 33412620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 40275120 - 40275169
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaat 213  Q
    ||||||||| ||||||||||||||||| || |||| |||||||| |||||    
T  40275120 ttttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaat 40275169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 43222909 - 43222856
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||| ||| ||||||||||||| |||| |||| |||||||| |||||||||    
T  43222909 ttttgacaagcgcacgaaaatggtcatgcctcttttaaatcgaacaaaatcgtc 43222856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 47431723 - 47431776
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||| | || |||| |||||||| |||||||||    
T  47431723 ttttgaccaactcacgaaaatggtcatacctcttttaaatcgaacaaaatcgtc 47431776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 50901046 - 50900993
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||||||||| ||||||| |||||| ||| ||||||||| |||| ||||    
T  50901046 ttttgaccagctcacaaaaatggccctgcctcttacaaatcgaacaaaaccgtc 50900993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 35578926 - 35579060
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||          ||||||| |||||| ||||||||    
T  35578926 ttttgaccagctcacaaaaatggtcctgccactttcaaatcgaacaaaaccgtcataaactatcatg--ttttttgcagttttaatcctacatcctattt 35579023  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||||||| ||||||||  || ||||||||    
T  35579024 tcaactccagaaacgcagagaaatgacatttttagac 35579060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 9393763 - 9393921
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||| |||||||||||||| ||| |||| ||||||||||||| |||| |||| ||||||||||||           ||||||||||||||||||||||    
T  9393763 ttttgatcagctcacgaaaattgtcttgcctctttcaaatcgaacaaaaccgtcctaaactatcatgttttttgct--gttttagtcctacctcctattt 9393860  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    ||||||||||||||  || |||||  ||||||||  || || |||||||||||||||||||    
T  9393861 tcaactccagaaacacagtgaaatgacagttttaagcaattatagacctaccccctatgct 9393921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 317
Target Start/End: Original strand, 4477729 - 4477881
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||||||  ||||||||||||||| ||| |||| |||| |||||||||||||  ||||||||||||          ||||||||||||||||||||||    
T  4477729 ttttgaccaattcacgaaaatggtcccgcctcttttaaattgaataaaatcgtccctaaactatcatgtttttgc---agttttagtcctacctcctatt 4477825  T
Q  263 ttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    ||| ||||||||||||| || |||||  ||||||| |  |||||||||||||||||    
T  4477826 ttcaaactccagaaacgcagggaaatgacagtttttggtagttttagacctacccc 4477881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 19590965 - 19590890
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  19590965 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagttttaggcggttttagacctacccc 19590890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 37787207 - 37787132
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||| | ||||||||||||||||||    
T  37787207 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgacagtttttggcagttttagacctacccc 37787132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 35579404 - 35579270
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattt 263  Q
    |||||| ||||||||||||||| |  |||| |||||||||| || |||| |||| ||||||||||||          |||||||||| ||||||||||||    
T  35579404 ttttgatcagctcacgaaaatgattatgcctctttcaaatcaaacaaaaccgtcctaaactatcatgttttttgc--agttttagtcatacctcctattt 35579307  T
Q  264 tcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||| | ||||| || |||||| |||||||||||    
T  35579306 tcaactctaaaaacgcagggaaataacagttttagac 35579270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 19830860 - 19830785
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||  ||||||||  ||||||||| | ||||||||||||||||    
T  19830860 tttttgtcctacctcctattttcaaactccagaaacacagagaaatgacagttttaggcggttttagacctacccc 19830785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 39136713 - 39136780
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatg 230  Q
    |||||||||||||||||||||||| ||| | ||||||||||||| |||||||| | ||||||||||||    
T  39136713 ttttgaccagctcacgaaaatggttctgactctttcaaatcgaacaaaatcgtccctaaactatcatg 39136780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 34533901 - 34533971
Alignment:
Q  248 gtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||||||||||||||||||| ||||| ||||| ||||||||  || |||||| ||||||||||||||||||    
T  34533901 gtcctacctcctattttcaaactccaaaaacgcagagaaatgacacttttaggcagttttagacctacccc 34533971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 39137052 - 39136986
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcat 229  Q
    |||||||| ||||||||||||||||||||| |||| |||||||| |||||||| |||||||| ||||    
T  39137052 ttttgacccgctcacgaaaatggtcctgcctcttttaaatcgaacaaaatcgtccataaactctcat 39136986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 49064061 - 49064171
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||| |||||| | ||||||||||||||          | ||||||||||| ||||||||    
T  49064061 ttttgaccagctcacgaaaatggtattgcctctttcaaatagaacaaaatcttccataaactatcatg---tttttgcacttttagtcctaactcctatt 49064157  T
Q  263 ttcaactccagaaa 276  Q
    ||||||||||||||    
T  49064158 ttcaactccagaaa 49064171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 29099955 - 29100028
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacc 315  Q
    |||| |||||||||||||||||||| | ||||||||||||| ||||  |||||||||  |||||||||||||||    
T  29099955 ttttcgtcctacctcctattttcaaaccccagaaacgtagataaatgacagttttaggaagttttagacctacc 29100028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 298
Target Start/End: Complemental strand, 34595291 - 34595158
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatgnnnnnnnnnnagttttagtcctacctcc-tat 261  Q
    ||||||||| |||||||||||||||||||  |||| |||||||| |||||||| | ||||||||||||          ||||||||| ||||| || |||    
T  34595291 ttttgaccaactcacgaaaatggtcctgcatcttttaaatcgaacaaaatcgtccctaaactatcatg---tttttgcagttttagtgctacccccttat 34595195  T
Q  262 tttcaactccagaaacgtagagaaatagcagttttag 298  Q
    ||||||||||||||||| | ||||||  |||||||||    
T  34595194 tttcaactccagaaacgcacagaaatgacagttttag 34595158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 2658944 - 2659016
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctac 314  Q
    |||| ||| |||||||||||||||| ||||| ||||| |||||||| |||||||||| | |||||||||||||    
T  2658944 ttttcgtcatacctcctattttcaaactccaaaaacgcagagaaatggcagttttaggccgttttagacctac 2659016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 32004726 - 32004794
Alignment:
Q  250 cctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||||||||||||||||| ||||||||||| ||||||||  ||||||||  | ||||||||||||||||    
T  32004726 cctacctcctattttcaaactccagaaacgcagagaaatgacagttttaagcggttttagacctacccc 32004794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 32427463 - 32427404
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||| ||||||||||||||||| | ||||| ||||||||  |||||||||||    
T  32427463 agttttagtccttcctcctattttcaactctaaaaacgcagagaaatgacagttttagac 32427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 38859081 - 38859006
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||   |||||||| | ||||||||||| ||||    
T  38859081 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgatagttttaggcggttttagacctgcccc 38859006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 45815566 - 45815465
Alignment:
Q  183 atggtcctgccgctttcaaatcgaataaaatcgtcataaactatcatgnnnnnnnnnnagttttagtcctacctcctattttcaactccagaaacgtaga 282  Q
    ||||| ||||| |||| |||||||| ||||||||| ||||||||||||          ||||||||| ||||||| |||||||||||||||||||| |||    
T  45815566 atggttctgcctcttttaaatcgaacaaaatcgtcctaaactatcatgtttttttgc-agttttagttctacctcttattttcaactccagaaacgcaga 45815468  T
Q  283 gaa 285  Q
    |||    
T  45815467 gaa 45815465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 49064239 - 49064173
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc-ataaactatcat 229  Q
    ||||| |||| |||||||||||||| || | ||||||||||||| ||||||||| ||||||||||||    
T  49064239 ttttggccagttcacgaaaatggtcatgactctttcaaatcgaacaaaatcgtcaataaactatcat 49064173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 787305 - 787252
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||||| || |||| |||||||| |||||||||    
T  787305 ttttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtc 787252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 26026344 - 26026407
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactat 226  Q
    ||||||||||||||||||| ||||| | || |||| |||||||| |||||||| ||||||||||    
T  26026344 ttttgaccagctcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccataaactat 26026407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 5333907 - 5333960
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||||||| | || |||| |||||||| |||||||||    
T  5333907 ttttgaccaactcacgaaaatggtcgtacctcttttaaatcgaacaaaatcgtc 5333960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 5334338 - 5334285
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| ||||||||||| ||||| || |||| |||||||| |||||||||    
T  5334338 ttttgaccaactcacgaaaatagtcctacctcttttaaatcgaacaaaatcgtc 5334285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 9394249 - 9394196
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||||||||| ||||||||||| ||  |||||||||||| |||| ||||    
T  9394249 ttttgaccagctcacaaaaatggtcctacctttttcaaatcgaacaaaaccgtc 9394196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 33880647 - 33880700
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||||||||| ||||| || ||||| ||||||||||||| |||| ||||    
T  33880647 ttttgaccagctcacaaaaattgttctgcctctttcaaatcgaacaaaaccgtc 33880700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 4641879 - 4641811
Alignment:
Q  248 gtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacc 315  Q
    ||||||| |||||||||| ||||| ||||||| ||||||||  ||||||||| | ||||||||| ||||    
T  4641879 gtcctacgtcctattttcaaactctagaaacgcagagaaatgacagttttaggcggttttagacatacc 4641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 34594685 - 34594721
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaac 277  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  34594685 agttttagtcctaccccctattttcaactcgagaaac 34594721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 205886 - 205752
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||  ||||||||||||          |||||||||||||| |||||||    
T  205886 ttttgaccaactcacgaaaatggtcctgcctctttcaaatcgaacaaaaccgtccctaaactatcatgtttttgc---agttttagtcctacgtcctatt 205790  T
Q  263 ttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||| ||||| |||||||| ||||||||||||    
T  205789 ttcaactccaaaaacgcagagaaatggcagttttagac 205752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 205053 - 205112
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||| | ||||||||||    
T  205053 agttttagtcctacctcctattttcaactctagaaacacagagaaatggaagttttagac 205112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 205482 - 205541
Alignment:
Q  241 agttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    ||||||||||| |||||||||||||||||| |||| |  |||||||| ||||||||||||    
T  205482 agttttagtccaacctcctattttcaactctagaatcacagagaaatggcagttttagac 205541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 210856 - 210790
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcat 229  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||| |||| ||| | |||||||||||    
T  210856 ttttgaccaactcatgaaaatggtcctgcctctttcaaatcgaacaaaaccgtccctaaactatcat 210790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 64745 - 64672
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacc 315  Q
    |||| |||||| || |||||||||| ||||||||||| ||| ||||| ||||||||| | ||||||||||||||    
T  64745 ttttcgtcctatcttctattttcaaactccagaaacggagaaaaataacagttttaggcggttttagacctacc 64672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 13225079 - 13225004
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||| | ||||||||||||||||    
T  13225079 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatggcagttttaggcggttttagacctacccc 13225004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 11656897 - 11656822
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |  || ||||||||||||    
T  11656897 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatagcagttttaggcgattgtagacctacccc 11656822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 12572291 - 12572216
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||| | |||||||| |||||||    
T  12572291 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaattgcagttttaggcggttttagatctacccc 12572216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 33743026 - 33743101
Alignment:
Q  243 ttttagtcctacctcctattttca-actccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||||||||||||||||||| || ||||||||| ||||||||  ||||||||| ||||||||||||||||||    
T  33743026 ttttcgtcctacctcctattttcataccccagaaacgcagagaaatgacagttttaggcagttttagacctacccc 33743101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 41681574 - 41681499
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| ||||||||| |||||||||| ||||||||||| |||||||| | |||||||| | ||||||||||||||||    
T  41681574 ttttcgtcctacctgctattttcaaactccagaaacgcagagaaatggtagttttaggcggttttagacctacccc 41681499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 9929014 - 9929088
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||| ||||||| ||||||||||| ||||||||  ||||||||| | |||||||||||||||    
T  9929014 ttttcgtcctacctccttttttcaaactccagaaacgcagagaaatgtcagttttaggcggttttagacctaccc 9929088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 18805266 - 18805324
Alignment:
Q  242 gttttagtcctacctcctattttcaactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||  |||||||||||    
T  18805266 gttttagtcctacctcctatcttcaactccagaaacacagagaaatgacagttttagac 18805324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 33328580 - 33328505
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||| |||||| |||||||| ||||||||||| |||||||| |||||||||| | |||||| |||||||||    
T  33328580 ttttcgtcccacctcccattttcaaactccagaaacgcagagaaatggcagttttaggcggttttaaacctacccc 33328505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 19176395 - 19176469
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||| ||||||||||||||| ||||||||||| ||||||||  || |||||| | |||||||||||||||    
T  19176395 ttttcgtccgacctcctattttcaaactccagaaacgcagagaaatgacaattttaggcggttttagacctaccc 19176469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 5730920 - 5730977
Alignment:
Q  242 gttttagtcctacctcc-tattttcaactccagaaacgtagagaaatagcagttttag 298  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||  |||||||||    
T  5730920 gttttagtcctacctccctatttttaactccagaaacgtacagaaatgacagttttag 5730977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 9177747 - 9177812
Alignment:
Q  253 acctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||||| |||||||| ||||||||||| ||||||||  ||||||||| | ||||||||||||||||    
T  9177747 acctcccattttcaaactccagaaacgaagagaaatgacagttttaggcggttttagacctacccc 9177812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 28876930 - 28876997
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactatcatg 230  Q
    |||||| ||||||||||||||  | ||||| ||||||||||||| |||||||| | ||||||||||||    
T  28876930 ttttgatcagctcacgaaaataattctgcctctttcaaatcgaacaaaatcgtccctaaactatcatg 28876997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 42035799 - 42035862
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgt-cataaactat 226  Q
    ||||||||| |||||||||||||| || || |||| |||||||| |||||||| ||||||||||    
T  42035799 ttttgaccaactcacgaaaatggttctacctcttttaaatcgaacaaaatcgtccataaactat 42035862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 44831352 - 44831427
Alignment:
Q  243 ttttagtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||||   |||||||| | ||||||||||| ||||    
T  44831352 ttttcgtcctacctcctattttcaaactccataaacgcagagaaatgatagttttaggcggttttagacctgcccc 44831427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 28877332 - 28877294
Alignment:
Q  242 gttttagtcctacctcctattttcaactccagaaacgta 280  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  28877332 gttttagtcctaccttctatttttaactccagaaacgta 28877294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 7911135 - 7911082
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    ||||||||| |||||||||||||| || || |||| |||||||| |||||||||    
T  7911135 ttttgaccaactcacgaaaatggttctacctcttttaaatcgaacaaaatcgtc 7911082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 18050018 - 18049978
Alignment:
Q  257 cctattttcaactccagaaacgtagagaaatagcagtttta 297  Q
    |||||||||||||||||||||| | ||||||| ||||||||    
T  18050018 cctattttcaactccagaaacgcacagaaataacagtttta 18049978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 11063 - 10989
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccc 316  Q
    |||| |||||||||||||||||||| ||| ||||||| |||||||| |||||||||| | |||||||||||||||    
T  11063 ttttcgtcctacctcctattttcaaactcgagaaacgcagagaaattgcagttttaggcggttttagacctaccc 10989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 15617 - 15505
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtca-taaactatcatgnnnnnnnnnnagttttagtcctacctcctatt 262  Q
    |||||| ||||||||||||||||||||| | ||||||||||||| ||||  |||  ||||||||||||          |||||||||| |||||||||||    
T  15617 ttttgatcagctcacgaaaatggtcctgactctttcaaatcgaacaaaactgtccctaaactatcatgtttttgt---agttttagtcatacctcctatt 15521  T
Q  263 ttcaactccagaaacg 278  Q
    ||||||||||||||||    
T  15520 ttcaactccagaaacg 15505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 15140 - 15188
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaa 212  Q
    ||||||||||||| |||||||| | ||||| ||||||||||||| ||||    
T  15140 ttttgaccagctcgcgaaaatgattctgcctctttcaaatcgaacaaaa 15188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 2107 - 2032
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||   |||||||| | ||||||||||||||||    
T  2107 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaatgaaagttttaggcggttttagacctacccc 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 16936 - 16861
Alignment:
Q  243 ttttagtcctacctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctacccc 317  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||||| |  |||||||||||||||    
T  16936 ttttcgtcctacctcctattttcaaactccagaaacgcagagaaattacagttttaggcgattttagacctacccc 16861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 159400 - 159334
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcg-tcataaactatcat 229  Q
    |||| ||| |||||||||||||||| || | ||||||||||||| ||||||| ||||||||||||||    
T  159400 tttttaccggctcacgaaaatggtcatgtctctttcaaatcgaacaaaatcgttcataaactatcat 159334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 159046 - 159099
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaatcgtc 217  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||| |||| ||||    
T  159046 tttttaccagctcacgaaaatgatcctgcctctttcaaatcgaacaaaaccgtc 159099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 584 - 536
Alignment:
Q  164 ttttgaccagctcacgaaaatggtcctgccgctttcaaatcgaataaaa 212  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||| ||||    
T  584 ttttgacgagctcacgaaaatggtcttgcctctttcaaatcgaacaaaa 536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 5224 - 5153
Alignment:
Q  254 cctcctattttcaa-ctccagaaacgtagagaaatagcagttttagacagttttagacctaccccctatgct 324  Q
    |||||||||||||| ||||||||||| ||| ||||  ||||||||| | ||||||||| |||||| ||||||    
T  5224 cctcctattttcaaactccagaaacgcagaaaaatgacagttttaggcggttttagacttaccccatatgct 5153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 1176 - 1123
Alignment:
Q  248 gtcctacctcctattttc-aactccagaaacgtagagaaatagcagttttagac 300  Q
    |||||||||||||||||| ||| ||||||||| ||| |||| ||||||||||||    
T  1176 gtcctacctcctattttcaaaccccagaaacgcagaaaaatggcagttttagac 1123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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