View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_7 (Length: 737)
Name: NF6131_low_7
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_7 |
 | |
|
| [»] scaffold0775 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 520 - 720
Target Start/End: Original strand, 22402633 - 22402833
Alignment:
| Q |
520 |
gtcaaagttgaaccattccttggtaggttgtaaacacacgtgagagacttattcttatctgttctaaaattctagttctccctcatgttatattccttct |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22402633 |
gtcaaagttgaaccattccttggtaggttgtaaacacacttgagagacttattcttatcagttctaaaattctagttctccctcatgttatattccttct |
22402732 |
T |
|
| Q |
620 |
agttgccaaagacgtgggcataagatccaaatttttaggaacacattattttggttataggagttaaagagcaagaccaaggcacacgttatgttagttc |
719 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22402733 |
agttgccaaagacgtgggcataagttccaaatgtttaggaacatattattttggttataggagttaaagagcaagaccaaggcacacgttattctagttc |
22402832 |
T |
|
| Q |
720 |
t |
720 |
Q |
| |
|
| |
|
|
| T |
22402833 |
t |
22402833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 357 - 450
Target Start/End: Original strand, 22402471 - 22402564
Alignment:
| Q |
357 |
tgtaacatcccaatatttataatcgtcagttttataattttattgatgtatcatttatttatttatctaatagtttattggatgaagtgttacc |
450 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
22402471 |
tgtaacatcccgatatttataatcgtcagttttataattttattgatgtatcatttatttatttatctaatagtttatttgatgaagtattacc |
22402564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0775 (Bit Score: 135; Significance: 6e-70; HSPs: 2)
Name: scaffold0775
Description:
Target: scaffold0775; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 502 - 350
Alignment:
| Q |
16 |
gagcacagagcaattgtatcaggccttgcgcgatgttagggagaggttggcacccgttttgaccggaaggcagcagcaggactagga---gaagtaggac |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
502 |
gagcacagagcagttgtatcaggccttgcgcgatgttagggagaggttggcacccgttttgaccggaaggcagcagcaggactaggagaagaagtaggac |
403 |
T |
|
| Q |
113 |
tagttgatgtgtaggacttgtttttagttttaatgttgagacatgagatagac |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
402 |
tagttgatgtgtaggacttgtttttagttttaatgttgagacatgagatagac |
350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0775; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 296 - 246
Alignment:
| Q |
219 |
acgcatgtggtaactttaagagaaaatgtatcggttgaatctaatatttat |
269 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
296 |
acgcatgtggtaactttaagagataatgtatcggttgaatctaatatttat |
246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 699
Target Start/End: Original strand, 21510302 - 21510341
Alignment:
| Q |
660 |
acacattattttggttataggagttaaagagcaagaccaa |
699 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21510302 |
acacattattttggttaaaggagttaaagagcaagaccaa |
21510341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University