View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_71 (Length: 326)

Name: NF6131_low_71
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_71
NF6131_low_71
[»] chr1 (12 HSPs)
chr1 (9-308)||(14467900-14468199)
chr1 (9-308)||(14504079-14504378)
chr1 (97-308)||(14482082-14482293)
chr1 (182-308)||(14532634-14532760)
chr1 (165-308)||(15002204-15002347)
chr1 (165-308)||(15032555-15032698)
chr1 (165-308)||(15037117-15037260)
chr1 (66-307)||(14522397-14522638)
chr1 (165-308)||(15011097-15011240)
chr1 (9-89)||(14483067-14483147)
chr1 (174-308)||(15017212-15017346)
chr1 (165-308)||(15040841-15040984)
[»] scaffold0400 (2 HSPs)
scaffold0400 (165-308)||(12876-13019)
scaffold0400 (195-304)||(6592-6701)
[»] scaffold0365 (2 HSPs)
scaffold0365 (165-308)||(13519-13662)
scaffold0365 (195-304)||(7236-7345)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 14468199 - 14467900
Alignment:
Q  9 gattattctgcaaccttggattcttttgtgtttgaagttcgaaatagataataggaaatcccataaccaaataatgctaacnnnnnnntgcctagagtga 108  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||    
T  14468199 gattcttctgcaaccttggattcttttctgttcgaagttcgaaatagataataggagatcccataaccaaataatgctaacaaaaaaatgcctagagtga 14468100  T
Q  109 tgggtaaaattaccaccaattttttgttagtcttatgagtattatggttcctattggatgttggacaaggctttaggctagaggcattaccacacaagtc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14468099 tgggtaaaattaccaccaattttttgttagtcttatgagtattagggttcctattggatgttggacaaggctttaggctagaagcattaccacacaagtc 14468000  T
Q  209 tttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14467999 tttgttgtttctcagtgcttcaattggagcctgttggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatatctacagttgtcaag 14467900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 14504378 - 14504079
Alignment:
Q  9 gattattctgcaaccttggattcttttgtgtttgaagttcgaaatagataataggaaatcccataaccaaataatgctaacnnnnnnntgcctagagtga 108  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||    
T  14504378 gattcttctgcaaccttggattcttttgtgttcgaagttcgaaatagataataggagatcccataaccaaataatgctaacaaaaaaatgcctagagtga 14504279  T
Q  109 tgggtaaaattaccaccaattttttgttagtcttatgagtattatggttcctattggatgttggacaaggctttaggctagaggcattaccacacaagtc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14504278 tgggtaaaattaccaccaattttttgttagtcttatgagtattatggttcctattggatgttggacaaggctttaggctagatgcattaccacacaagtc 14504179  T
Q  209 tttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | | ||||||||    
T  14504178 tttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaattggttgtatgatatatcaataattgtcaag 14504079  T

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Target: chr1; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 97 - 308
Target Start/End: Complemental strand, 14482293 - 14482082
Alignment:
Q  97 tgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattatggttcctattggatgttggacaaggctttaggctagaggcatt 196  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || |   ||||||||||||||||||||||||||||||||||    
T  14482293 tgcctagagtgatgggtaaaactaccaccaactttttgttagtcttatgagtattatgttttccgctggatgttggacaaggctttaggctagaggcatt 14482194  T
Q  197 accacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatatct 296  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14482193 accacacaagtctttgttgtttctcagtgcttcaattggagttttctggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatatct 14482094  T
Q  297 acagttgtcaag 308  Q
    |||||| |||||    
T  14482093 acagttatcaag 14482082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 182 - 308
Target Start/End: Original strand, 14532634 - 14532760
Alignment:
Q  182 taggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaactgg 281  Q
    ||||| |||| |||||||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||    
T  14532634 taggccagagacattaccacacaagcctttgttatttctaagtgcttcaattggagctttttggaaggctgtaatgcttggaattggaccctccaattgg 14532733  T
Q  282 ttgtacgatatatctacagttgtcaag 308  Q
    ||||| |||||||| ||| ||||||||    
T  14532734 ttgtatgatatatcaacaattgtcaag 14532760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 15002347 - 15002204
Alignment:
Q  165 gatgttggacaaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaa 264  Q
    |||||||  ||||||| ||||| |||  |||||||||||||| ||||||| ||||||||||||||||||||||||  || ||| |||| |||| |||||     
T  15002347 gatgttgagcaaggctctaggccagaaacattaccacacaagcctttgttatttctcagtgcttcaattggagctctttcgaaagctgtaatgtttggag 15002248  T
Q  265 tcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  15002247 tcggaccctccaactggttgtaagatatatcaacagttgtcaag 15002204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 15032698 - 15032555
Alignment:
Q  165 gatgttggacaaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaa 264  Q
    |||||||  ||||||| ||||| |||| |||||||||| ||| ||||||| ||| ||| ||||||||||||||||| || ||| |||| |||| ||||||    
T  15032698 gatgttgagcaaggctctaggccagagacattaccacataagcctttgttatttgtcaatgcttcaattggagcttttttgaaagctgtaatgtttggaa 15032599  T
Q  265 tcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    | |||||||||||||||||||| |||||||| ||||||||||||    
T  15032598 ttggaccctccaactggttgtaagatatatcaacagttgtcaag 15032555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 15037260 - 15037117
Alignment:
Q  165 gatgttggacaaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaa 264  Q
    |||||||  ||||||| ||||| |||| |||||||||| ||| ||||||| ||| ||| ||||||||||||||||  || ||| |||| |||| ||||||    
T  15037260 gatgttgagcaaggctctaggccagagacattaccacataagcctttgttatttgtcaatgcttcaattggagctcttttgaaagctgtaatgtttggaa 15037161  T
Q  265 tcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  15037160 tcggaccctccaactggttgtaagatatatcaacagttgtcaag 15037117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 307
Target Start/End: Original strand, 14522397 - 14522638
Alignment:
Q  66 atcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattatggttcctattgg 165  Q
    ||||||||| ||||||||||||||        ||||||||||| || ||||| || ||||||  |||||||||| |||||| |||    ||| | |   |    
T  14522397 atcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttccacctg 14522496  T
Q  166 atgttggacaaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaat 265  Q
    ||||||  ||||||| ||||| |||| ||||||| |||||| ||||||| ||||| | |||||||| |||||||  |||||| |||| |||| |||||||    
T  14522497 atgttgagcaaggctctaggccagagacattaccgcacaagcctttgttatttctaaatgcttcaactggagctctttggaatgctgtaatgtttggaat 14522596  T
Q  266 cggaccctccaactggttgtacgatatatctacagttgtcaa 307  Q
     |||||||||||| ||||||| |||||||| |||||||||||    
T  14522597 tggaccctccaaccggttgtaagatatatcaacagttgtcaa 14522638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 15011240 - 15011097
Alignment:
Q  165 gatgttggacaaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaa 264  Q
    |||||||  ||||||| ||||| |||| |||||||||| ||| ||||||| ||| ||| ||||||||||||||||  || ||| |||| ||   ||||||    
T  15011240 gatgttgagcaaggctctaggccagagacattaccacataagcctttgttatttgtcaatgcttcaattggagctcttttgaaagctgtaacatttggaa 15011141  T
Q  265 tcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    ||||||||||||| |||||||| |||||||| ||||||||||||    
T  15011140 tcggaccctccaattggttgtaagatatatcaacagttgtcaag 15011097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 14483147 - 14483067
Alignment:
Q  9 gattattctgcaaccttggattcttttgtgtttgaagttcgaaatagataataggaaatcccataaccaaataatgctaac 89  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||| ||||||||||||||    
T  14483147 gattcttctgcaaccttggattcttttttgtttgaagttcgaaatagataatatgagataccataaacaaataatgctaac 14483067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 15017346 - 15017212
Alignment:
Q  174 caaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccct 273  Q
    ||||||| ||||| ||||  ||||||||||||| | ||||| ||| ||| ||||||||||||||||  |  ||| |||| |||| ||||| |||||||||    
T  15017346 caaggctctaggccagagatattaccacacaagcccttgttatttgtcaatgcttcaattggagctcttccgaaagctgtaatgtttggagtcggaccct 15017247  T
Q  274 ccaactggttgtacgatatatctacagttgtcaag 308  Q
    ||||||||||||| |||| ||| ||||||||||||    
T  15017246 ccaactggttgtaagatacatcaacagttgtcaag 15017212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 15040984 - 15040841
Alignment:
Q  165 gatgttggacaaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaa 264  Q
    |||||||  ||| ||| ||||| |||| |||||||||||||| ||||||| ||||| | |||||||| ||| |||||| |||||| || |||  ||||||    
T  15040984 gatgttgagcaatgctctaggccagagacattaccacacaagcctttgttatttcttaatgcttcaaatggggcttgtaggaaggatgaaatttttggaa 15040885  T
Q  265 tcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    | ||||||| ||| |||||| | |||||||| ||||||||||||    
T  15040884 ttggacccttcaattggttgcatgatatatcaacagttgtcaag 15040841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 13019 - 12876
Alignment:
Q  165 gatgttggacaaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaa 264  Q
    |||||||  ||||||| ||| | |||| |||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||| | ||||    
T  13019 gatgttgagcaaggctctagaccagagacattaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggctggaatgttaggaa 12920  T
Q  265 tcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    ||||||||||||| |||||||| |||||||| ||| ||||||||    
T  12919 tcggaccctccaattggttgtatgatatatcaacaattgtcaag 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 6701 - 6592
Alignment:
Q  195 ttaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatat 294  Q
    |||||||||||| ||||||| ||||| | ||||||||||||||| | || ||||||||||||| ||||||| ||||| || || |||||||| |||||||    
T  6701 ttaccacacaagcctttgttatttcttaatgcttcaattggagcatttttgaaggctggaatgtttggaattggaccttcaaattggttgtatgatatat 6602  T
Q  295 ctacagttgt 304  Q
    | | ||||||    
T  6601 caatagttgt 6592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 13662 - 13519
Alignment:
Q  165 gatgttggacaaggctttaggctagaggcattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaa 264  Q
    |||||||  ||||||| ||| | |||| |||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||| | ||||    
T  13662 gatgttgagcaaggctctagaccagagacattaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggctggaatgttaggaa 13563  T
Q  265 tcggaccctccaactggttgtacgatatatctacagttgtcaag 308  Q
    ||||||||||||| |||||||| |||||||| ||| ||||||||    
T  13562 tcggaccctccaattggttgtatgatatatcaacaattgtcaag 13519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 7345 - 7236
Alignment:
Q  195 ttaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatat 294  Q
    |||||||||||| ||||||| ||||| | ||||||||||||||| | || ||||||||||||| ||||||| ||||| || || |||||||| |||||||    
T  7345 ttaccacacaagcctttgttatttcttaatgcttcaattggagcatttttgaaggctggaatgtttggaattggaccttcaaattggttgtatgatatat 7246  T
Q  295 ctacagttgt 304  Q
    | | ||||||    
T  7245 caatagttgt 7236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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