View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_77 (Length: 318)

Name: NF6131_low_77
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_77
NF6131_low_77
[»] chr5 (24 HSPs)
chr5 (19-311)||(16275127-16275420)
chr5 (32-236)||(4796256-4796462)
chr5 (32-224)||(31973446-31973640)
chr5 (69-224)||(15844237-15844392)
chr5 (32-228)||(904761-904964)
chr5 (140-236)||(38603912-38604007)
chr5 (130-184)||(30587838-30587892)
chr5 (32-149)||(28010203-28010323)
chr5 (69-149)||(873783-873864)
chr5 (32-151)||(31973210-31973331)
chr5 (192-250)||(31973136-31973194)
chr5 (69-149)||(27760327-27760408)
chr5 (69-149)||(37995721-37995802)
chr5 (32-148)||(24918061-24918180)
chr5 (190-250)||(30366670-30366730)
chr5 (32-149)||(13843594-13843714)
chr5 (196-249)||(35708276-35708329)
chr5 (213-250)||(40267015-40267052)
chr5 (86-149)||(1028180-1028244)
chr5 (86-149)||(13843966-13844030)
chr5 (136-184)||(14531681-14531729)
chr5 (195-235)||(24125125-24125165)
chr5 (69-148)||(24994008-24994088)
chr5 (195-231)||(37781849-37781885)
[»] chr8 (23 HSPs)
chr8 (75-249)||(30590390-30590565)
chr8 (43-231)||(34529896-34530086)
chr8 (32-231)||(38886999-38887200)
chr8 (32-207)||(39590597-39590772)
chr8 (77-250)||(26642531-26642705)
chr8 (137-236)||(16956637-16956736)
chr8 (107-205)||(16213167-16213265)
chr8 (69-208)||(26639047-26639187)
chr8 (38-179)||(15156986-15157129)
chr8 (32-172)||(25971323-25971466)
chr8 (32-149)||(31766898-31767018)
chr8 (32-162)||(28488406-28488538)
chr8 (32-149)||(23027915-23028035)
chr8 (69-231)||(44933090-44933249)
chr8 (131-231)||(30602896-30602996)
chr8 (40-144)||(18900826-18900930)
chr8 (32-121)||(3184018-3184110)
chr8 (86-150)||(20298602-20298667)
chr8 (188-249)||(30966069-30966130)
chr8 (86-149)||(21085235-21085299)
chr8 (168-231)||(18900762-18900825)
chr8 (195-243)||(45031160-45031208)
chr8 (195-243)||(45031369-45031417)
[»] chr7 (41 HSPs)
chr7 (25-231)||(16015414-16015622)
chr7 (70-250)||(30610794-30610973)
chr7 (108-231)||(14595886-14596009)
chr7 (32-236)||(28358981-28359188)
chr7 (85-231)||(32000769-32000916)
chr7 (32-248)||(422649-422866)
chr7 (69-250)||(39079927-39080109)
chr7 (32-236)||(16015721-16015926)
chr7 (76-250)||(41387473-41387648)
chr7 (32-236)||(14596193-14596398)
chr7 (32-184)||(23721041-23721195)
chr7 (86-236)||(10406586-10406737)
chr7 (75-250)||(25589057-25589232)
chr7 (69-236)||(41709954-41710122)
chr7 (130-236)||(30898990-30899096)
chr7 (40-184)||(41389213-41389358)
chr7 (107-231)||(21033835-21033960)
chr7 (32-183)||(39079682-39079835)
chr7 (46-184)||(12840624-12840764)
chr7 (131-246)||(21033610-21033726)
chr7 (32-222)||(3973058-3973258)
chr7 (32-236)||(12305049-12305262)
chr7 (73-250)||(46870253-46870431)
chr7 (106-167)||(14092252-14092313)
chr7 (106-167)||(14402270-14402331)
chr7 (69-162)||(46753063-46753157)
chr7 (32-94)||(21033953-21034016)
chr7 (32-149)||(257354-257474)
chr7 (32-149)||(1663692-1663811)
chr7 (32-146)||(43167983-43168100)
chr7 (69-149)||(28909968-28910049)
chr7 (195-235)||(8585154-8585194)
chr7 (195-235)||(36092600-36092640)
chr7 (107-149)||(8585066-8585108)
chr7 (162-236)||(35021648-35021722)
chr7 (69-149)||(1661278-1661359)
chr7 (32-149)||(7135330-7135450)
chr7 (70-103)||(10193510-10193543)
chr7 (69-149)||(41670804-41670885)
chr7 (196-233)||(49057324-49057361)
chr7 (195-235)||(31374828-31374868)
[»] chr2 (38 HSPs)
chr2 (32-227)||(18183364-18183561)
chr2 (106-250)||(14407962-14408107)
chr2 (41-236)||(9889319-9889523)
chr2 (69-250)||(5511788-5511969)
chr2 (108-250)||(26580057-26580199)
chr2 (32-236)||(26760827-26761032)
chr2 (69-250)||(39583436-39583618)
chr2 (130-222)||(21374232-21374324)
chr2 (127-184)||(21373987-21374044)
chr2 (32-207)||(20135017-20135187)
chr2 (133-199)||(39583179-39583245)
chr2 (76-231)||(37253280-37253434)
chr2 (137-236)||(36901147-36901246)
chr2 (74-167)||(14522441-14522535)
chr2 (190-249)||(3008417-3008476)
chr2 (106-250)||(11339676-11339826)
chr2 (69-149)||(15820188-15820269)
chr2 (107-159)||(35872850-35872902)
chr2 (69-149)||(25441632-25441713)
chr2 (195-249)||(33456024-33456078)
chr2 (75-162)||(3003981-3004070)
chr2 (120-189)||(33070110-33070179)
chr2 (86-149)||(18901951-18902015)
chr2 (195-250)||(7252234-7252289)
chr2 (77-163)||(18959505-18959592)
chr2 (69-149)||(17509045-17509126)
chr2 (106-151)||(21213970-21214015)
chr2 (70-103)||(21373920-21373953)
chr2 (195-236)||(28895589-28895630)
chr2 (120-161)||(33080108-33080149)
chr2 (32-149)||(43169139-43169259)
chr2 (195-231)||(884120-884156)
chr2 (86-149)||(3976558-3976622)
chr2 (195-235)||(5424783-5424823)
chr2 (195-231)||(10849496-10849532)
chr2 (195-235)||(16007040-16007080)
chr2 (106-150)||(21214287-21214331)
chr2 (195-231)||(31761195-31761231)
[»] chr1 (50 HSPs)
chr1 (32-250)||(41590215-41590433)
chr1 (32-250)||(34626760-34626980)
chr1 (70-236)||(12410342-12410510)
chr1 (32-250)||(19810684-19810903)
chr1 (32-250)||(19810997-19811217)
chr1 (35-218)||(40566284-40566468)
chr1 (128-250)||(17557709-17557829)
chr1 (32-246)||(18998609-18998825)
chr1 (130-250)||(7524985-7525105)
chr1 (127-243)||(19809951-19810066)
chr1 (35-198)||(51515615-51515781)
chr1 (69-227)||(18998329-18998489)
chr1 (32-181)||(6868031-6868182)
chr1 (33-184)||(7907896-7908049)
chr1 (106-250)||(41590526-41590662)
chr1 (33-163)||(5087831-5087963)
chr1 (41-250)||(33248312-33248527)
chr1 (41-250)||(33268484-33268699)
chr1 (69-199)||(13978521-13978652)
chr1 (73-205)||(12581374-12581508)
chr1 (106-172)||(51188878-51188944)
chr1 (69-197)||(8000447-8000581)
chr1 (32-149)||(31305608-31305728)
chr1 (32-149)||(33879865-33879985)
chr1 (32-149)||(33964270-33964390)
chr1 (70-155)||(19459660-19459746)
chr1 (196-249)||(347107-347160)
chr1 (128-189)||(13653364-13653425)
chr1 (32-103)||(11636204-11636276)
chr1 (142-245)||(40571537-40571640)
chr1 (69-147)||(45264599-45264678)
chr1 (145-203)||(17558270-17558328)
chr1 (195-234)||(369663-369702)
chr1 (195-250)||(13031127-13031182)
chr1 (192-231)||(19609190-19609229)
chr1 (78-207)||(14623152-14623282)
chr1 (69-149)||(4022212-4022293)
chr1 (69-149)||(8520180-8520261)
chr1 (69-149)||(20735458-20735539)
chr1 (197-234)||(43938910-43938947)
chr1 (195-235)||(17419850-17419890)
chr1 (195-231)||(21638271-21638307)
chr1 (195-235)||(33342279-33342319)
chr1 (195-231)||(33879783-33879819)
chr1 (195-231)||(33964436-33964472)
chr1 (195-231)||(35926253-35926289)
chr1 (195-235)||(43361553-43361593)
chr1 (195-235)||(43361758-43361798)
chr1 (194-230)||(43421760-43421796)
chr1 (195-231)||(45403503-45403539)
[»] chr6 (22 HSPs)
chr6 (32-251)||(1205849-1206070)
chr6 (108-250)||(1206165-1206307)
chr6 (69-224)||(18286821-18286977)
chr6 (32-208)||(1205577-1205756)
chr6 (69-250)||(16509712-16509895)
chr6 (32-145)||(9602078-9602193)
chr6 (69-149)||(12134570-12134651)
chr6 (81-142)||(130761-130824)
chr6 (32-149)||(31960-32078)
chr6 (109-216)||(26400945-26401051)
chr6 (35-149)||(10418425-10418542)
chr6 (23-149)||(24055196-24055325)
chr6 (76-231)||(15544496-15544650)
chr6 (178-231)||(130691-130744)
chr6 (89-149)||(1408967-1409028)
chr6 (106-183)||(9156154-9156231)
chr6 (69-223)||(9237095-9237256)
chr6 (169-226)||(18612754-18612811)
chr6 (69-149)||(19054429-19054510)
chr6 (195-235)||(5269274-5269314)
chr6 (195-231)||(19712614-19712650)
chr6 (195-231)||(24558851-24558887)
[»] chr4 (42 HSPs)
chr4 (75-236)||(48046298-48046461)
chr4 (80-250)||(30490940-30491108)
chr4 (32-243)||(52043071-52043284)
chr4 (32-236)||(26942872-26943077)
chr4 (83-250)||(3137622-3137787)
chr4 (114-236)||(23311470-23311592)
chr4 (32-236)||(22870552-22870758)
chr4 (106-243)||(54595370-54595507)
chr4 (33-149)||(53738295-53738414)
chr4 (23-149)||(29669765-29669893)
chr4 (74-250)||(3136931-3137107)
chr4 (32-147)||(46332622-46332740)
chr4 (32-152)||(54595145-54595267)
chr4 (50-144)||(26942679-26942775)
chr4 (130-208)||(19190761-19190842)
chr4 (32-149)||(29669450-29669569)
chr4 (69-149)||(15665088-15665170)
chr4 (184-250)||(46676670-46676736)
chr4 (32-149)||(36558553-36558673)
chr4 (69-149)||(43972291-43972372)
chr4 (32-149)||(50857909-50858029)
chr4 (32-149)||(50858225-50858345)
chr4 (42-144)||(26942464-26942568)
chr4 (86-149)||(45427339-45427403)
chr4 (45-103)||(3137297-3137356)
chr4 (194-249)||(50830704-50830758)
chr4 (23-149)||(32988357-32988486)
chr4 (78-147)||(43971984-43972054)
chr4 (195-249)||(55253345-55253399)
chr4 (72-149)||(56509548-56509626)
chr4 (69-149)||(991140-991221)
chr4 (178-231)||(37494414-37494467)
chr4 (188-245)||(43760640-43760697)
chr4 (195-235)||(991267-991307)
chr4 (107-151)||(13254358-13254402)
chr4 (194-242)||(22823899-22823947)
chr4 (196-236)||(27117225-27117265)
chr4 (195-231)||(29113512-29113548)
chr4 (195-231)||(34205998-34206034)
chr4 (195-231)||(35399262-35399298)
chr4 (195-231)||(35399421-35399457)
chr4 (86-149)||(53740135-53740199)
[»] chr3 (28 HSPs)
chr3 (69-250)||(39225011-39225197)
chr3 (32-236)||(34250352-34250558)
chr3 (75-229)||(51917822-51917977)
chr3 (76-247)||(25568440-25568612)
chr3 (71-250)||(54861463-54861643)
chr3 (32-228)||(662625-662821)
chr3 (35-207)||(351081-351258)
chr3 (69-236)||(35035036-35035204)
chr3 (35-149)||(14170086-14170203)
chr3 (32-191)||(50070552-50070712)
chr3 (32-151)||(45443177-45443299)
chr3 (32-149)||(41380621-41380741)
chr3 (32-149)||(54368936-54369056)
chr3 (69-144)||(24860152-24860228)
chr3 (154-234)||(31606453-31606533)
chr3 (105-200)||(45016869-45016964)
chr3 (86-151)||(13769376-13769442)
chr3 (194-236)||(45941133-45941175)
chr3 (69-149)||(43101458-43101539)
chr3 (195-235)||(5440680-5440720)
chr3 (72-149)||(3985712-3985790)
chr3 (197-235)||(50338383-50338421)
chr3 (32-149)||(4255407-4255527)
chr3 (32-149)||(4256131-4256251)
chr3 (195-231)||(13769296-13769332)
chr3 (195-231)||(25627925-25627961)
chr3 (195-250)||(35018503-35018559)
chr3 (86-149)||(44573279-44573343)
[»] scaffold0103 (1 HSPs)
scaffold0103 (113-207)||(47396-47490)
[»] scaffold0006 (1 HSPs)
scaffold0006 (128-189)||(143125-143186)
[»] scaffold0060 (2 HSPs)
scaffold0060 (195-235)||(13633-13673)
scaffold0060 (195-231)||(20603-20639)
[»] scaffold0419 (1 HSPs)
scaffold0419 (195-235)||(4240-4280)
[»] scaffold0054 (1 HSPs)
scaffold0054 (195-231)||(21268-21304)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 16275127 - 16275420
Alignment:
Q  19 aatgaagtgttacaaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgtaccttcattgtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16275127 aatgaagtgttacaaattccgccttcattgcggtccacccctagccacctgattgcggcatttgggttgccttcattgcagcctccgtaccttcattgtg 16275226  T
Q  118 ttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16275227 ttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtgtaaagtttgggcagccctcaccttacaaggtggttttg 16275326  T
Q  218 taaggttgagttagacccagcccaaattctaagtgtgagaggaatcgtggcttttctcacccctctctcaactcaagatttttaattacctttg 311  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16275327 taaggttgagttagacccagcccaaattctaagtatgagaggaatcgtggcttttctcacccctctctcaactcaagatttttaattacctttg 16275420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 4796256 - 4796462
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||||||||||||||||| || ||||||||| | | ||||| |||||||||||||||||||||||||||||   |||||||||||||||| ||| |||    
T  4796256 aaattccgccttcattgcggcccgcccctagccgcataattgcagcatttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtgaag 4796355  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||||||||||||| |||||||| |||||||||||| |||||||||| |||||||  ||||||||||||||||||||||  |||||||||||| ||||||    
T  4796356 gggtggatttagtcacacattgcttagagatatggcatgtgtagtgtttataaagcatgggcagccctcaccttacaagcgggttttgtaaggatgagtt 4796455  T
Q  230 agaccca 236  Q
    || ||||    
T  4796456 aggccca 4796462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 31973640 - 31973446
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||| ||||| | ||| ||| ||||||||| | | |||| |||||||| |||||||| ||||||||||||   |||||||||||||||| ||| ||     
T  31973640 aaattcctccttcctcgcgatccgcccctagccgcctaattgaggcatttgagttgcctttattgcagcctccaacaccttcattgtgttgggtgtgaaa 31973541  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggtt 224  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  31973540 gggtggatttagtcccacattgtctagagatatggcctatgtagtgtttataaagtttgggcagccctcacctcacacgctggttttgtaaggtt 31973446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 15844392 - 15844237
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    ||||||||||||||||| ||||| ||||| ||| |   |||||||||||||||  ||| |||||||||||||||||||||||| ||||||||||| | |     
T  15844392 attgcggcatttgggttaccttcgttgcaacctacaacaccttcattgtgttgagtgtgaaggggtggatttagtcccacatttcctagagatat-gaca 15844294  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggtt 224  Q
    |||| |||  ||||||||||||| |||||||||| ||||||  ||||||||||||||    
T  15844293 gtgttgtgcttataaagtttgggaagccctcaccatacaagccggttttgtaaggtt 15844237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 904964 - 904761
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga-ttgcggcatttgggttg-----ccttcattgcagcctccgtacc-ttcattgtgttggatg 124  Q
    |||||| |||||||||| ||||| |||||| || || | |||||||||||| ||||     ||||||||||||||| |   || ||||||||||||  |     
T  904964 aaattctgccttcattgtggtccgcccctatccgcttaattgcggcatttgagttgagttgccttcattgcagccttcaagcccttcattgtgttgcctt 904865  T
Q  125 tcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggtt 224  Q
    | ||||||||||||||||||||||||||  | | ||||||| |||||||||| ||||||  ||| ||| |||||||||||||||  |||||||||||| |    
T  904864 tgaaggggtggatttagtcccacattgctaacatatatggcttgtgtagtgtttataaaacttgagcatccctcaccttacaagccggttttgtaaggat 904765  T
Q  225 gagt 228  Q
    ||||    
T  904764 gagt 904761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 38604007 - 38603912
Alignment:
Q  140 agtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    ||||||||||||| || ||||||||| |||||||||| ||||||| ||||||| ||||||||||||||   |||||||||||  |||||||||||||    
T  38604007 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcaccttacaaaccggttttgtaagtatgagttagaccca 38603912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 30587892 - 30587838
Alignment:
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaag 184  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  30587892 gggtggatttagtcccacattgctcagagatatggcatgtgtagtgtgtataaag 30587838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 28010323 - 28010203
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||  ||||||| |||  |  ||||||| ||||| |||||||||||||||||| |   |||||||||||||||| | | |     
T  28010323 aaattccgcctttattgcggtctgcccctagtcacctaaattgcggcctttggcttgccttcattgcagccttcaacaccttcattgtgttggctttgag 28010224  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  28010223 ggggtggatttagtcccacat 28010203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 873864 - 873783
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||||| ||||| |||||||||||||||| |||   |||||||||||||||| | | | |||||||||||||||||||||    
T  873864 attgcggcctttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 873783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 31973331 - 31973210
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaag 129  Q
    |||||| ||||||||||| |||| |||| |||| | | ||||||||||||||||| ||||||||| |  ||||   |||||| ||||||||| | | |||    
T  31973331 aaattctgccttcattgcagtccgcccccagccgcctaattgcggcatttgggtttccttcattgaaatctccaacaccttcgttgtgttgggtttgaag 31973232  T
Q  130 gggtggatttagtcccacattg 151  Q
    |||||||||||||||| |||||    
T  31973231 gggtggatttagtccctcattg 31973210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 31973194 - 31973136
Alignment:
Q  192 agccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    ||||||||||||||| |  |||||||||||||| |||||| |||| |||||||||||||    
T  31973194 agccctcaccttacatgccggttttgtaaggttcagttaggcccaacccaaattctaag 31973136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 27760327 - 27760408
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  27760327 attgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 27760408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 37995802 - 37995721
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||||| ||||| ||||||||||| |||| |||   |||||||||||||||| | | | |||||||||||||||||||||    
T  37995802 attgcggcctttggtttgccttcattccagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 37995721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 24918061 - 24918180
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    ||||||||||||||||||||||| ||||||  | |  |  ||| | ||||||| |||||||||||||| | |||   |||||||||||||||| | | |     
T  24918061 aaattccgccttcattgcggtccgcccctaatcgcctaaattgtgacatttggtttgccttcattgcaacttccaacaccttcattgtgttggctttgag 24918160  T
Q  129 ggggtggatttagtcccaca 148  Q
    ||||||||||||||||||||    
T  24918161 ggggtggatttagtcccaca 24918180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 30366670 - 30366730
Alignment:
Q  190 gcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||| ||||||||||||||  || |||||||||||||||||| ||||  ||||||||||||    
T  30366670 gcagtcctcaccttacaagccggctttgtaaggttgagttaggcccaaaccaaattctaag 30366730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 13843594 - 13843714
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||||| | || || | ||||| ||||||||||||   |||||||||||||||| | | |     
T  13843594 aaattccgccttaattgcggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggctttgag 13843693  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  13843694 ggggtggatttagtcccacat 13843714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 35708329 - 35708276
Alignment:
Q  196 ctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaa 249  Q
    |||| |||||||| |||||||||  |||||||||||||||  ||||||||||||    
T  35708329 ctcatcttacaagttggttttgttgggttgagttagacccgacccaaattctaa 35708276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 40267052 - 40267015
Alignment:
Q  213 ttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||||||||||||||||||||| | |||||||||||||    
T  40267052 ttttgtaaggttgagttagaccaaacccaaattctaag 40267015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 1028244 - 1028180
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||| |||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  1028244 gcctacattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 1028180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 13843966 - 13844030
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||| ||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  13843966 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 13844030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 14531729 - 14531681
Alignment:
Q  136 atttagtcccacattgcctagagatatggcctgtgtagtgtgtataaag 184  Q
    ||||||||||||||| |||||||||| | ||| |||||||| |||||||    
T  14531729 atttagtcccacattccctagagatacgacctatgtagtgtttataaag 14531681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 24125125 - 24125165
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  24125125 cctcaccttacaagccggttttgtaaggatgagttagaccc 24125165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 24994008 - 24994088
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccaca 148  Q
    |||||| ||||||| || ||||||||||| | |||   |||||||||||||||| | | | ||||||||||||||||||||    
T  24994008 attgcgacatttggtttaccttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24994088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 37781885 - 37781849
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  37781885 cctcaccttacaagctggttttgtaaggatgagttag 37781849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 30590390 - 30590565
Alignment:
Q  75 gcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtag 173  Q
    |||||||||||||||||||||||||||||   |||||||||||||| | ||| |||||||||||||||||||||||||| |||| ||||||| |||||||    
T  30590390 gcatttgggttgccttcattgcagcctccaacaccttcattgtgtttggtgtgaaggggtggatttagtcccacattgcatagatatatggcatgtgtag 30590489  T
Q  174 tgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaa 249  Q
    ||| ||||||| |||||||||||||||||||||||  |||||||||||||||| |||| || ||||||||||||||    
T  30590490 tgtttataaagcttgggcagccctcaccttacaagccggttttgtaaggttgacttaggcctagcccaaattctaa 30590565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 34529896 - 34530086
Alignment:
Q  43 tcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccg-taccttcattgtgttggatgtcaaggggtggattta 140  Q
    |||||||||||| ||||| ||| | | ||||||||||||||||||||||||||  |||||||  ||||||||||||||||| ||| |||||| |||||||    
T  34529896 tcattgcggtcctcccctggccgcctaattgcggcatttgggttgccttcatttaagcctcctataccttcattgtgttgggtgtaaaggggcggattta 34529995  T
Q  141 gtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||  ||||| ||||| ||||||||||| ||||||| ||||||| || |||||| ||||| | ||||||||||| ||||||||    
T  34529996 gtcccacattgattagaggtatggtctgtgtagtgtttataaagcttgggcatccgtcacctcacaagcttgttttgtaaggatgagttag 34530086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 32 - 231
Target Start/End: Original strand, 38886999 - 38887200
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||| |||||||||| |||||||||||||| | | ||||||||||||||||||||||| |||||||||||   |||||||||||||||| ||| |||    
T  38886999 aaattcctccttcattgctgtccacccctagccgcctaattgcggcatttgggttgccttcgttgcagcctccaacaccttcattgtgttgggtgtgaag 38887098  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||| |||||| |||||||||||||||||||||| ||| |||||||  ||||||| |||| || || |||| |||| ||  | |||| ||||||||||||    
T  38887099 gggttgatttaatcccacattgcctagagatatgacctatgtagtgcttataaagcttggacaaccatcactttacgagcggattttctaaggttgagtt 38887198  T
Q  230 ag 231  Q
    ||    
T  38887199 ag 38887200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 39590597 - 39590772
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||| ||||  |||||||||| ||||||||| | | |||||||||||||||| ||||||||||||| ||||   |||||||||||||||| ||| |||    
T  39590597 aaattctgcctctattgcggtccgcccctagccgcctaattgcggcatttgggt-gccttcattgcagtctccaacaccttcattgtgttgg-tgtgaag 39590694  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaa 207  Q
    |||||||| ||||||  |||||| |||||||||||||||| |||||| |||||||  |||||||||||||||||||||    
T  39590695 gggtggatatagtccagcattgcttagagatatggcctgtctagtgtttataaagcatgggcagccctcaccttacaa 39590772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 26642531 - 26642705
Alignment:
Q  77 atttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtg 175  Q
    ||||||||| |||||||||||| |||    |||||||||||||||  ||| |  ||||||||||||| |||||||||||||||||||| | |||||||||    
T  26642531 atttgggtttccttcattgcagtctcaaacaccttcattgtgttgagtgtgattgggtggatttagttccacattgcctagagatatgacatgtgtagtg 26642630  T
Q  176 tgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    | |||||| |||  | |||| ||||||||||||  ||||| |||||||||| |||| |||| |||||||||||||    
T  26642631 tttataaattttaagaagccttcaccttacaagccggtttggtaaggttgatttaggcccaacccaaattctaag 26642705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 16956637 - 16956736
Alignment:
Q  137 tttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    ||||||||| |||| |||||||||| | | || ||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16956637 tttagtccctcattacctagagatacgacatgcgtagtgtttataaattttgggcagccctcaccttacaaggtggttttgtaaggatgagttagaccca 16956736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 16213265 - 16213167
Alignment:
Q  107 ccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttac 205  Q
    ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||  ||||| ||||||| | ||||||||||||    
T  16213265 ccttcattgtgttggatgtgaaggggtggatttagtctcacactgcctagagatatggcctatgtagtgattataatgtttgggtaaccctcaccttac 16213167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 26639047 - 26639187
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    |||||| |||||||||| |||||||||||| | ||   |||||||||||||||  ||| | |||||||||||||||||||||||||| |||||| | | |    
T  26639047 attgcgacatttgggtttccttcattgcagtccccaacaccttcattgtgttgagtgtgagggggtggatttagtcccacattgccttgagatacgacat 26639146  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaag 208  Q
    ||||||||| |||||| |||| | |||| ||||||||||||    
T  26639147 gtgtagtgtttataaattttgagaagccttcaccttacaag 26639187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 15156986 - 15157129
Alignment:
Q  38 cgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcattgcagcctccgtacc-ttcattgtgttggatgtcaaggggtgg 135  Q
    ||||||||||||||||| || ||||||  || ||||||| ||||||||| |||| |||||||||||| |  | ||| ||||||||| ||| || ||||||    
T  15156986 cgccttcattgcggtccgcctctagccgtctaattgcggaatttgggttcccttaattgcagcctccattgcgttcgttgtgttgggtgtgaaagggtgg 15157085  T
Q  136 atttagtcccacattgcctagagatatggcctgtgtagtgtgta 179  Q
    ||||||||||||||||  || |||||||||||||||| ||||||    
T  15157086 atttagtcccacattgaatatagatatggcctgtgtactgtgta 15157129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 25971323 - 25971466
Alignment:
Q  32 aaattccgccttca-ttgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||||| ||||||||||||||||||| | | |||| | ||||| ||| |||||||||||||| |||   |||||||||||| ||| ||| ||    
T  25971323 aaattccgccttcagttgcggtccacccctagccgcctaattgtgacattttggtagccttcattgcagcatccaacaccttcattgtgctgggtgtgaa 25971422  T
Q  129 ggggtggatttagtcccacattgcctagagatatggcctgtgta 172  Q
    |||||||||| |||| ||||||||| ||||||||| ||| ||||    
T  25971423 ggggtggattcagtcacacattgccaagagatatgacctatgta 25971466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 31766898 - 31767018
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac--tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaa 128  Q
    ||||||||||||||||||||||| ||||||| |||    |||||||| ||||| ||||||||||||||||||||    ||||||||||||||| | | |     
T  31766898 aaattccgccttcattgcggtccgcccctagtcacctaaattgcggcctttggtttgccttcattgcagcctccaaccccttcattgtgttggctttgag 31766997  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  31766998 ggggtggatttagtcccacat 31767018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 28488538 - 28488406
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||| ||||| |||| |||||||||||| || | | |||| |||||||| |||||||||||||||||||     |||||||||||||||| | | |||    
T  28488538 aaattctgcctttattgtggtccacccctaaccgcctaattgtggcatttgagttgccttcattgcagccttaaacaccttcattgtgttgggtttgaag 28488439  T
Q  130 gggtggatttagtcccacattgcctagagatat 162  Q
    ||||||||||||||||| ||||| || ||||||    
T  28488438 gggtggatttagtcccatattgcttatagatat 28488406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 23028035 - 23027915
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||  ||||||| |||  |  ||||||| ||||| |||||||||||||||||| |   |||||||||||||||| | | |     
T  23028035 aaattccgcctttattgcggtctgcccctagtcacctaaattgcggcctttggcttgccttcattgcagccttcaacaccttcattgtgttggctttgag 23027936  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  23027935 ggggtggatttagtcccacat 23027915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 44933249 - 44933090
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    ||||| || |||||||||||||||||||| |||||   |||||||||||||||| | | ||||||||||||||||| |||||  | |||||||||| |||    
T  44933249 attgcagcctttgggttgccttcattgcaccctccaacaccttcattgtgttgggtttgaaggggtggatttagtctcacatcacttagagatatgacct 44933150  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
     ||||   | | |||||  | || ||||||||||||| ||| ||||||||||| | ||||||||    
T  44933149 atgta---tttctaaagcat-ggtagccctcaccttaaaagctggttttgtaatgatgagttag 44933090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 30602896 - 30602996
Alignment:
Q  131 ggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtta 230  Q
    ||||||||||| |||||||||| ||||||| |||| |||||||||| ||||||   ||||||||| || |||||||    |||||||||||| |||||||    
T  30602896 ggtggatttagacccacattgcttagagatgtggcatgtgtagtgtttataaaacatgggcagccttccccttacacaccggttttgtaaggatgagtta 30602995  T
Q  231 g 231  Q
    |    
T  30602996 g 30602996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 18900930 - 18900826
Alignment:
Q  40 ccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccg-taccttcattgtgttggatgtcaaggggtggat 137  Q
    ||||||||| ||||| ||| ||||||| | |||||| ||||||||  ||| ||||||||||||||| |||||||| | |||||  ||| |||||||||||    
T  18900930 ccttcattgtggtccgcccttagccacctaattgcgccatttggg--gccatcattgcagcctccgataccttcactatgttgagtgtgaaggggtggat 18900833  T
Q  138 ttagtcc 144  Q
    |||||||    
T  18900832 ttagtcc 18900826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 3184110 - 3184018
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttgg 121  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||||||| ||||| ||||||||||||||||||||   ||||||||||||||||    
T  3184110 aaattccgcctttattgcggtccgcccctagtcgcctaaattgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgttgg 3184018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 20298667 - 20298602
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacatt 150  Q
    ||||||||||||||||||   |||||||||||||||| | | | ||||||||||||||||||||||    
T  20298667 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacatt 20298602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 30966130 - 30966069
Alignment:
Q  188 gggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaa 249  Q
    |||||| ||||||||||||||  ||||||||||  ||||||||| |||| ||||||||||||    
T  30966130 gggcagtcctcaccttacaagccggttttgtaaatttgagttaggcccaacccaaattctaa 30966069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 21085299 - 21085235
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  21085299 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 21085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 18900825 - 18900762
Alignment:
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    ||||||||| ||||||| ||||||| ||||| |||||||||   |||| |||||||||||||||    
T  18900825 gtgtagtgtttataaagcttgggcatccctcgccttacaagtcagtttagtaaggttgagttag 18900762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 45031208 - 45031160
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaa 243  Q
    ||||||||| ||||  ||||||||||||||||||||| |||| ||||||    
T  45031208 cctcacctttcaagccggttttgtaaggttgagttaggcccaacccaaa 45031160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 45031417 - 45031369
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaa 243  Q
    ||||||||||||||  ||||||||||||||| ||||| |||| ||||||    
T  45031417 cctcaccttacaagccggttttgtaaggttgtgttaggcccaacccaaa 45031369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 16015622 - 16015414
Alignment:
Q  25 gtgttacaaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgtac-cttcattgtgttgga 122  Q
    |||||| |||||||  |||||||||| ||| ||||||||||| | ||||||| ||| ||  |||||||||| |  |||||  |  |||||||||||||      
T  16015622 gtgttagaaattccaacttcattgcgatccgcccctagccacctaattgcggaattaggaatgccttcatttccacctccaaaatcttcattgtgttgac 16015523  T
Q  123 tgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaagg 222  Q
    ||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  16015522 tgtgaaggggtggatttagtcccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaaagctggttttgtaagg 16015423  T
Q  223 ttgagttag 231  Q
    |||||||||    
T  16015422 ttgagttag 16015414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 70 - 250
Target Start/End: Complemental strand, 30610973 - 30610794
Alignment:
Q  70 ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctg 168  Q
    |||| |||||||||||||||||||||||||||||   |||||||||||||||| ||  |||||||||||||| || |||||||||||||||||||||||     
T  30610973 ttgcagcatttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgggaaggggtggatttaatctcacattgcctagagatatggcct- 30610875  T
Q  169 tgtagtgtgtataaagtttgggcagccctcaccttac-aaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
      |||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| |||||    
T  30610874 --tagtgtttataaagcttgggcagccctcaccttacaaagctggttttgtaaggttgagttagacccaacctaaatgctaag 30610794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 14596009 - 14595886
Alignment:
Q  108 cttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaa 207  Q
    |||||||||||||  ||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||    
T  14596009 cttcattgtgttgactgtgaaggggtggatttagccccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaaa 14595910  T
Q  208 ggtggttttgtaaggttgagttag 231  Q
    |  |||||||||||||||||||||    
T  14595909 gccggttttgtaaggttgagttag 14595886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 28358981 - 28359188
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||| ||||||| ||||| ||||||| || || ||||||||||||||||| |||||||||||||||||   ||||||||| | |||| ||| ||     
T  28358981 aaattccgcattcattgtggtccgcccctagtcatctaattgcggcatttgggtttccttcattgcagcctccaacaccttcattattttgggtgtgaaa 28359080  T
Q  130 -gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagt 228  Q
     ||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||   |||||||||| || ||| ||| ||||||||||||| |||||    
T  28359081 tgggtggattcagtcccacattgcctagagatatagcctgtgtagtgtttataaagcaagggcagccctaacgttaaaagatggttttgtaaggatgagt 28359180  T
Q  229 tagaccca 236  Q
    ||| ||||    
T  28359181 taggccca 28359188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 32000769 - 32000916
Alignment:
Q  85 tgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaa 183  Q
    ||||||||||||||||| |   |||||||| ||||||| | | | ||| |||||||||||||||| ||| |||||||||| |||||||||||| ||||||    
T  32000769 tgccttcattgcagccttcaacaccttcatggtgttggctttgaggggatggatttagtcccacaatgcttagagatatgtcctgtgtagtgtttataaa 32000868  T
Q  184 gtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    | |||||||||||||||||||||||  |||||||||||| ||||||||    
T  32000869 gcttgggcagccctcaccttacaagccggttttgtaaggatgagttag 32000916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 422866 - 422649
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||||||||||||||| | ||| ||||  | | || |||||||||||||||||| ||||||||| |||   |||||||||||||||| ||| |||    
T  422866 aaattccgccttcattgcggttcgccc-tagcagcctaatcgcggcatttgggttgcctccattgcagcttccaacaccttcattgtgttgggtgtgaag 422768  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||||  |||| |||||||||||||||||||||||||| || ||||  ||||||| ||||||||| ||||||||| ||   ||||| |||||||||| ||    
T  422767 gggtgactttaatcccacattgcctagagatatggcctatgcagtgattataaagcttgggcagctctcaccttaaaatccggtttcgtaaggttgaatt 422668  T
Q  230 agacccagcccaaattcta 248  Q
     | |||| || ||||||||    
T  422667 gggcccaacctaaattcta 422649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 39080109 - 39079927
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    ||||||||||||||||||||||| || ||||||||   ||| ||||||| | || |||  ||||||||||||| || ||||||||||||||||||| | |    
T  39080109 attgcggcatttgggttgccttcgttccagcctccaacaccctcattgtatcgggtgtggaggggtggatttaatctcacattgcctagagatatgacat 39080010  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    ||||||||| ||||||  ||| ||||||| ||| |||||||  |||||||||||||| |||||| |||| |||||||| ||||    
T  39080009 gtgtagtgtttataaaacttgtgcagcccccactttacaagccggttttgtaaggtttagttaggcccaacccaaattttaag 39079927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 16015926 - 16015721
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||| ||||||||| |||||  |||||||   || ||||||||||||||||| |||||||||||||||||   |  ||||| ||||| | ||| ||     
T  16015926 aaattccaccttcattgtggtccgtccctagctgtctaattgcggcatttgggttaccttcattgcagcctccaacattttcatcgtgttcggtgtgaat 16015827  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||  |||||| |||||||||||||||||||||||| |  ||||||| || |||| |||||||||||||||||||||| || | ||||||||||||||||    
T  16015826 gggcagatttattcccacattgcctagagatatggctttcgtagtgtttagaaagcttgggcagccctcaccttacaa-gtcggtttgtaaggttgagtt 16015728  T
Q  230 agaccca 236  Q
    || ||||    
T  16015727 aggccca 16015721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 41387473 - 41387648
Alignment:
Q  76 catttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagt 174  Q
    |||||||||||||||||||||| |||||   |||||||||||||| | | | ||||||||| |||||||||||||||||| || |||||  || ||||||    
T  41387473 catttgggttgccttcattgcaacctccaacaccttcattgtgttaggtatgaaggggtgggtttagtcccacattgccttgacatatgaactatgtagt 41387572  T
Q  175 gtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |  |||||| |||||| |||| ||||||||||||   ||| ||||||||| | ||||||||| | |||||||||||    
T  41387573 gcttataaaatttgggtagccttcaccttacaagcctgttctgtaaggtttaattagacccaacacaaattctaag 41387648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 14596398 - 14596193
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||| |||||| || |||||| ||||||||  || ||||||||||||||||| |||||||||| ||||||   |  ||||| ||||| | ||| ||     
T  14596398 aaattccaccttcaatgtggtccatccctagccgtctaattgcggcatttgggttaccttcattgctgcctccaacattttcatcgtgttcggtgtgaat 14596299  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||  |||||| |||||||||||||||||||| ||| |  ||||||| || |||| |||||||||||||||||||||||  || ||||||||||||||||    
T  14596298 gggcagatttattcccacattgcctagagataaggctttcgtagtgtttagaaagcttgggcagccctcaccttacaagccgg-tttgtaaggttgagtt 14596200  T
Q  230 agaccca 236  Q
    || ||||    
T  14596199 aggccca 14596193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 23721041 - 23721195
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaag 129  Q
    ||||||| |||| | |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||   | | |||||||||||||  | |||    
T  23721041 aaattccacctttaatgcggtcctcccctagccacctaattgcggcatttgggttgccttcattgcagcctccaacaacatcattgtgttggacttgaag 23721140  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaag 184  Q
    |||||| ||||||||| |||||  |||| ||||||||| |||||||| |||||||    
T  23721141 gggtgggtttagtccctcattgtttagaaatatggcctatgtagtgtttataaag 23721195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 10406737 - 10406586
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaag 184  Q
    ||||||||||||||||||   || |||| |||||||| | | | | ||||| ||||||| |||||  | ||||||||||||||||||||||| |||||||    
T  10406737 gccttcattgcagcctccaacactttcactgtgttggctttgaggcggtgggtttagtctcacatctcttagagatatggcctgtgtagtgtttataaag 10406638  T
Q  185 tttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
      ||||||||||||||| |||||| ||||||||||||| |||||||| ||||    
T  10406637 catgggcagccctcaccgtacaagctggttttgtaaggatgagttaggccca 10406586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 25589232 - 25589057
Alignment:
Q  75 gcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtag 173  Q
    |||||||||||||||||| | ||||||||   | | ||| |||||||| ||| |||||||| ||||||||| ||||||| | || ||||||| |||||||    
T  25589232 gcatttgggttgccttcacttcagcctccaacatcctcactgtgttgggtgtgaaggggtgaatttagtcc-acattgcttggatatatggcatgtgtag 25589134  T
Q  174 tgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    ||| ||||||  ||||||||||||| |||||||||  ||||||||||   ||||||||  ||| |||||||||||||    
T  25589133 tgtttataaaacttgggcagccctctccttacaagccggttttgtaatactgagttaggtccaacccaaattctaag 25589057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 41709954 - 41710122
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    ||||| |||||| ||||| |||||||||| |||||   |||||||||||||||| | | | ||||||||||||||||||  | || |||| |||||||||    
T  41709954 attgcagcatttaggttgtcttcattgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtcccatgtcgcttagacatatggcct 41710053  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    || |||||| |||||||  |||||| ||||| |||||||||  | |||||||||| |||||||| ||||    
T  41710054 gtctagtgtttataaagcatgggcatccctcgccttacaagtcgattttgtaaggatgagttaggccca 41710122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 30899096 - 30898990
Alignment:
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    ||||||||||||||||||||||| |||||||| | | |||||||||| ||||||| |||||||||||||| ||||||||  |||||| || || ||||||    
T  30899096 gggtggatttagtcccacattgcttagagataggtcatgtgtagtgtatataaagcttgggcagccctcatcttacaagccggttttttacggatgagtt 30898997  T
Q  230 agaccca 236  Q
    || ||||    
T  30898996 aggccca 30898990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 41389213 - 41389358
Alignment:
Q  40 ccttcattgcggtccacccctagcc-actgattgcggcatttgggttgccttcattgcagcc-tccgtaccttcattgtgttggatgtcaaggggtggat 137  Q
    ||||||||||||||  ||| ||||| ||| |||||||| ||||  ||| ||||||||||||| ||   |||||||||||||| | ||| |||||||||||    
T  41389213 ccttcattgcggtctgcccgtagccgactaattgcggcctttga-ttgtcttcattgcagccatcaacaccttcattgtgttaggtgtgaaggggtggat 41389311  T
Q  138 ttagtcccacattgcctagagatatggcctgtgtagtgtgtataaag 184  Q
    ||||||||||||||| ||||||||| ||||||||||| | |||||||    
T  41389312 ttagtcccacattgcttagagatatagcctgtgtagtatttataaag 41389358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 21033960 - 21033835
Alignment:
Q  107 ccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtat-aaagtttgggcagccctcaccttac 205  Q
    |||||||| |||||  ||| |||||||| |||||||| ||||||||||||||||||||| | ||| |||| ||| |||| |||||||||||||||||||     
T  21033960 ccttcattatgttgtgtgtgaaggggtgaatttagtctcacattgcctagagatatggcatttgtggtgtttataaaagcttgggcagccctcaccttaa 21033861  T
Q  206 aaggtggttttgtaaggttgagttag 231  Q
    |||    |||||||||||||||||||    
T  21033860 aagccaattttgtaaggttgagttag 21033835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 39079835 - 39079682
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||| ||||||||||||||||  |||||||||| || ||||||||||||| |||| ||||||  ||||||||   |||||||||||||||| ||| |||    
T  39079835 aaatttcgccttcattgcggtctgcccctagccatctaattgcggcatttgagttgtcttcatcacagcctccaacaccttcattgtgttgggtgtgaag 39079736  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaa 183  Q
    ||||||||||||     || |||||||||||||||| |||| ||||| ||||||    
T  39079735 gggtggatttagataatcaatgcctagagatatggcatgtgcagtgtttataaa 39079682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 12840764 - 12840624
Alignment:
Q  46 ttgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtc 143  Q
    ||||||||| ||||||||| | | ||||||||||||||||||  |||||||||  ||||   |||||| ||||||||| | | || |||||| ||||||     
T  12840764 ttgcggtccgcccctagcctcctaattgcggcatttgggttgttttcattgcattctccaacaccttcgttgtgttgggtttgaaagggtggctttagtt 12840665  T
Q  144 ccacattgcctagagatatggcctgtgtagtgtgtataaag 184  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  12840664 ccacattgcctagagatatggcttgtgtagtgtttataaag 12840624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 21033726 - 21033610
Alignment:
Q  131 ggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtat-aaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||| |||||||||||| |||||||||||||||||||||||| ||| | | |||| ||  |||||| |||||||||| | ||||||||||||||||||||    
T  21033726 ggtgaatttagtcccacgttgcctagagatatggcctgtgtaatgtttttaaaagcttcagcagccttcaccttacatgctggttttgtaaggttgagtt 21033627  T
Q  230 agacccagcccaaattc 246  Q
    || ||||  ||||||||    
T  21033626 aggcccaatccaaattc 21033610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 3973058 - 3973258
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagcc-actgattgcggcatttgggttgccttcattgcagcc-tccgtaccttcattgtgttggatgtcaag 129  Q
    |||||||||||||||||||||||||||||||||  || |||||  ||||||||||||||||||||||||| ||   |||||||| ||||||| | | | |    
T  3973058 aaattccgccttcattgcggtccacccctagccgcctaattgcaacatttgggttgccttcattgcagccttcaacaccttcatcgtgttgggtttgagg 3973157  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtag--------tgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaag 221  Q
    ||||||||||  ||||||  ||| | |||||||||  |||||||        ||| ||||||| |||| || |||||||||||||||  |||||||||||    
T  3973158 gggtggattttttcccacggtgcttggagatatggtgtgtgtagtactgtaatgtttataaagcttggacaaccctcaccttacaagccggttttgtaag 3973257  T
Q  222 g 222  Q
    |    
T  3973258 g 3973258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 12305262 - 12305049
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||||||||| |||||||||  ||| ||||  | | ||||||||||||||| || |||  ||||||||| |   |||||||||||||||| | | ||     
T  12305262 aaattccgcctttattgcggtctgcccttagctgcctaattgcggcatttgggctgacttatttgcagccttcaacaccttcattgtgttgggtttaaaa 12305163  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagt-------gtgtataaagtttgggcagccctcaccttacaaggtggttttgtaagg 222  Q
    || |||||||||||||| ||||| ||||||||||||  |||||||       || |||||||| |||||||||||||| |||||||  |||| |||||||    
T  12305162 ggatggatttagtcccatattgcttagagatatggctggtgtagtcagtagtgtttataaagtatgggcagccctcactttacaagccggttctgtaagg 12305063  T
Q  223 ttgagttagaccca 236  Q
     |||||||| ||||    
T  12305062 atgagttaggccca 12305049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 250
Target Start/End: Original strand, 46870253 - 46870431
Alignment:
Q  73 cggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaa-ggggtggatttagtcccacattgcctagagatatggcctgtg 170  Q
    ||||||||||| |||| || |||||||||||   || |||||||| | || ||| || |||||||||||||||||||||||||||| |||||||| ||||    
T  46870253 cggcatttgggctgccatctttgcagcctccaacactttcattgtttagggtgtgaagggggtggatttagtcccacattgcctagggatatggcatgtg 46870352  T
Q  171 tagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||| | ||||||| ||| ||| ||||||  ||| || |  ||||||||||| |||||||   ||| |||||||||||||    
T  46870353 tagtatttataaagcttgagcaaccctcaaatta-aaagccgttttgtaaggatgagttaagtccaacccaaattctaag 46870431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 14092313 - 14092252
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    |||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  14092313 accttcattgtgctggatgtgagggggtgggtttagtcccacattgcctagagatatggcct 14092252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 14402331 - 14402270
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    |||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  14402331 accttcattgtgctggatgtgagggggtgggtttagtcccacattgcctagagatatggcct 14402270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 46753063 - 46753157
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatat 162  Q
    ||||| ||||||||||||||||||| |||||||||   |  ||| ||||||||| ||| ||||||| |||||||||| |||||||||||||||||    
T  46753063 attgctgcatttgggttgccttcatcgcagcctccaacatgttccttgtgttgggtgtgaaggggtagatttagtccaacattgcctagagatat 46753157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 21034016 - 21033953
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcatt 94  Q
    ||||||||||||||||||||||| |||||||||| || ||||  ||||||||||||||||||||    
T  21034016 aaattccgccttcattgcggtccgcccctagccacctaattgtagcatttgggttgccttcatt 21033953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 257474 - 257354
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | |     
T  257474 aaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgag 257375  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  257374 ggggtggatttagtcccacat 257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 1663811 - 1663692
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac--tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| |||||||   |  | |||||||| ||||| | ||||||||||||||||||   |||||||||||||||| | |  |    
T  1663811 aaattccgccttaattgcggtccgcccctagttgccttaattgcggcctttggttagccttcattgcagcctccaacaccttcattgtgttggct-ttga 1663713  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  1663712 ggggtggatttagtcccacat 1663692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 43168100 - 43167983
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | |     
T  43168100 aaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgag 43168001  T
Q  129 ggggtggatttagtccca 146  Q
    ||||||||||||||||||    
T  43168000 ggggtggatttagtccca 43167983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 28909968 - 28910049
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| |||| |||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  28909968 attgcgccctttggtttgctttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 28910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 8585154 - 8585194
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  8585154 cctcaccttacaagctggttttgtaaggatgagttagaccc 8585194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 36092640 - 36092600
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  36092640 cctcaccttacaagctggttttgtaaggatgagttagaccc 36092600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 8585066 - 8585108
Alignment:
Q  107 ccttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||||||||||||| | | |||||||||||||||||||||||    
T  8585066 ccttcattgtgttggctttgaaggggtggatttagtcccacat 8585108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 35021722 - 35021648
Alignment:
Q  162 tggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    |||| |||||||||| || |||| | | |||||| ||| |||||||| || |||||||||||||||||| |||||    
T  35021722 tggcatgtgtagtgtttacaaagctagtgcagccatcatcttacaagctgattttgtaaggttgagttataccca 35021648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 1661359 - 1661278
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||||||||||||||||   |||||||||| ||||| | | | |||||||||||||||||||||    
T  1661359 attgcgacctttggttagccttcattgcagcctccaacaccttcattgcgttggctttgacggggtggatttagtcccacat 1661278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 7135450 - 7135330
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgta-ccttcattgtgttggatgtcaa 128  Q
    ||||||||| || |||||||||| ||||||| |||  |  ||||| | ||||| | |||||||||||| ||||| |  ||||||||||||||| | | |     
T  7135450 aaattccgctttaattgcggtccgcccctagtcacctaaattgcgacctttggttagccttcattgcaacctccatttccttcattgtgttggctttgag 7135351  T
Q  129 ggggtggatttagtcccacat 149  Q
    ||||||||||||||| |||||    
T  7135350 ggggtggatttagtcacacat 7135330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 10193543 - 10193510
Alignment:
Q  70 ttgcggcatttgggttgccttcattgcagcctcc 103  Q
    ||||||||||||||||||||| ||||||||||||    
T  10193543 ttgcggcatttgggttgccttaattgcagcctcc 10193510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 41670804 - 41670885
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||||||||||||||||   ||| |||||||||||| | | | |||||||||||||||||||||    
T  41670804 attgcgacctttggttagccttcattgcagcctccaacaccctcattgtgttggctttgagggggtggatttagtcccacat 41670885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 49057324 - 49057361
Alignment:
Q  196 ctcaccttacaaggtggttttgtaaggttgagttagac 233  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  49057324 ctcaccttacaagttggttttgtaaggatgagttagac 49057361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 31374828 - 31374868
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  31374828 cctcaccttacaagccggttttgtaaggatgagttagaccc 31374868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 18183364 - 18183561
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||||||||||||| ||||||| ||||| | | | ||||||||||| |||||||||||||||||||||   |||||||||||||||| ||| | |    
T  18183364 aaattccgccttcattgcgatccacccttagccgcctaagtgcggcatttgagttgccttcattgcagcctccaacaccttcattgtgttgggtgtgatg 18183463  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgag 227  Q
    || ||||||||||||   ||||||| |||||||||| |||||||||| ||||||| |||||||||| ||||||||||||  |||||||||||||||||    
T  18183464 ggatggatttagtcctgaattgccttgagatatggcttgtgtagtgtttataaagcttgggcagccttcaccttacaagccggttttgtaaggttgag 18183561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 250
Target Start/End: Original strand, 14407962 - 14408107
Alignment:
Q  106 accttcattgtgttggatgtcaaggggt-ggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcacctta 204  Q
    |||||||||||||||  ||| ||||||| |||||| ||| ||||||| |||||||||||| ||||||||||| ||||||| ||| ||| |||| ||||||    
T  14407962 accttcattgtgttgagtgtgaaggggttggatttggtctcacattgtctagagatatggtctgtgtagtgtttataaagcttgtgcaacccttacctta 14408061  T
Q  205 caaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    ||||  ||||||||||||||||||||| ||| ||| ||||||||||    
T  14408062 caagccggttttgtaaggttgagttaggcccggccgaaattctaag 14408107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 9889523 - 9889319
Alignment:
Q  41 cttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccg-taccttcattgtgttggatgtcaaggggtgga-t 137  Q
    ||||||||||| |||||||||||  | | |||| |||||||||||||||||||||||| ||||||  | ||||||||| |||| ||| ||||| |||| |    
T  9889523 cttcattgcggaccacccctagcttcctaattgtggcatttgggttgccttcattgcaacctccgacatcttcattgtattgggtgtgaagggatggatt 9889424  T
Q  138 ttagtcccaca------ttgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||      |||||||||||||||  | ||||||||| ||| || ||||||||||||||||| ||||||  |||||||||||| ||||||||    
T  9889423 ttagtcccacattgcctttgcctagagatatgagccgtgtagtgtttatgaaatttgggcagccctcaccatacaagccggttttgtaaggatgagttag 9889324  T
Q  232 accca 236  Q
     ||||    
T  9889323 gccca 9889319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 5511969 - 5511788
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgta-ccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    ||||||||||| ||||||||||||||  ||| |||    ||||||||||||||  ||| |||||||| ||||||||| | ||||||||||||||| || |    
T  5511969 attgcggcattagggttgccttcattatagcttccaacgccttcattgtgttgtgtgtgaaggggtgtatttagtccaatattgcctagagatatagctt 5511870  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    | ||||||| ||||||| |||||| |||||||||| | |||  ||||||  ||||||||||||| |||| |||||||||||||    
T  5511869 g-gtagtgtttataaagcttgggctgccctcacctaaaaagccggttttagaaggttgagttaggcccaacccaaattctaag 5511788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 26580199 - 26580057
Alignment:
Q  108 cttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaa 207  Q
    |||||||||||||| ||| ||||  |  |||||||||| ||||||||||| |||||| ||||||||||| | ||||| | ||||||||||| ||||| ||    
T  26580199 cttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagaaatatgggctgtgtagtgtttgtaaagctcgggcagccctctccttataa 26580100  T
Q  208 ggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |   || |||||||||||| |||| |||| |||||||||||||    
T  26580099 gccagtcttgtaaggttgaattaggcccaacccaaattctaag 26580057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 26761032 - 26760827
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||| |||||||||||||||  ||||||||| | | || | ||||||||||||||||| || ||||| | |   ||||| |||||||||  | | |||    
T  26761032 aaattctgccttcattgcggtctgcccctagccgcctaatcgtggcatttgggttgccttgatggcagcattcaacacctttattgtgttgagtttgaag 26760933  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||||| |||||||||||||||| |||||||||||||||||| |||  ||||||     |||| |||||||||||||||  ||| |||||||| ||||||    
T  26760932 gggtgggtttagtcccacattgcttagagatatggcctgtgtggtgattataaa-aagaggcacccctcaccttacaagccggtattgtaaggatgagtt 26760834  T
Q  230 agaccca 236  Q
    |||||||    
T  26760833 agaccca 26760827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 39583436 - 39583618
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgtaccttc-attgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    |||||||||||||||||||||||||||||| ||||    |||| ||||||||   ||| ||| |||||||||||||||   ||||||||||| ||||| |    
T  39583436 attgcggcatttgggttgccttcattgcagtctccaacacttccattgtgttcagtgtgaagaggtggatttagtcccttgttgcctagagaaatggcat 39583535  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |  |||||  ||||||||||||||||||||  |||||||||  ||||||| | | ||||| ||| |||  |||||||||||||    
T  39583536 gcctagtgcttataaagtttgggcagcccttgccttacaagccggttttgcaggattgagataggcccgacccaaattctaag 39583618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 21374232 - 21374324
Alignment:
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaagg 222  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||| | |||||  |||||| || |||||||||||| |||||||||||||    
T  21374232 gggtggatttagtcatacattgcatagagatatggcctgtgtagtgtttgtaaagcatgggcaaccttcaccttacaagctggttttgtaagg 21374324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 21373987 - 21374044
Alignment:
Q  127 aaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaag 184  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21373987 aaggggtgaatttagtcccacattgcctagagatatggcctgtgtagtgtttataaag 21374044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 20135187 - 20135017
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||||||||||||||||| |||| |||  | | |||| |||||||| ||||||||||||||||  |||   |||||||||| | ||| ||| |||    
T  20135187 aaattccgccttcattgcggtcctccccaagctgcctaattgtggcatttgtgttgccttcattgcagattccaacaccttcattgcgctgggtgtgaag 20135088  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaa 207  Q
    || || ||||||||||||||       ||||||||||| | |||||| |||||||||||||||||||| |||||||||    
T  20135087 ggttg-atttagtcccacata------agatatggcctatatagtgtttataaagtttgggcagcccttaccttacaa 20135017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 39583179 - 39583245
Alignment:
Q  133 tggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctca 199  Q
    ||||||||||||||||||||||| ||||||||||| |||||||  || |||||||||||||||||||    
T  39583179 tggatttagtcccacattgcctatagatatggcctatgtagtgcttacaaagtttgggcagccctca 39583245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 37253434 - 37253280
Alignment:
Q  76 catttgggttgccttcattgcagcctccg-taccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagt 174  Q
    ||||||||||||||||||||||||||||  ||||||| || |||||| ||| |  |||| |||||||||| |||||  ||||| |||   | ||||||||    
T  37253434 catttgggttgccttcattgcagcctccaataccttcgttatgttgggtgtaa--gggtagatttagtccaacattatctagaaatactacatgtgtagt 37253337  T
Q  175 gtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    || | ||||| ||||||| | ||||||| |||||  |||||||||||||| ||||||    
T  37253336 gtttgtaaagcttgggcaacactcacctcacaagccggttttgtaaggttcagttag 37253280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 36901147 - 36901246
Alignment:
Q  137 tttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    ||||||||| |||||| |||||||||| | |||||||||| ||||||| ||  |||||||||||||||||||    |||||||||| |||||||| ||||    
T  36901147 tttagtcccccattgcttagagatatgacatgtgtagtgtttataaagcttaagcagccctcaccttacaagccatttttgtaaggatgagttaggccca 36901246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 14522441 - 14522535
Alignment:
Q  74 ggcatttgggttgccttcattgcagcctccg-taccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    |||||||| ||||  |||||||||||||||  ||||||||||||| ||| ||| ||||| |||||||| ||||||||||| |||| |||||||||    
T  14522441 ggcatttgagttgtattcattgcagcctccaataccttcattgtgatgggtgtaaagggctggatttaatcccacattgcatagatatatggcct 14522535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 3008417 - 3008476
Alignment:
Q  190 gcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaa 249  Q
    |||||||||||||||||||   |||||||||||||||||||| |||| ||||||||||||    
T  3008417 gcagccctcaccttacaagccagttttgtaaggttgagttaggcccaacccaaattctaa 3008476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 11339826 - 11339676
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtg--------tagtgtgtataaagtttgggcagccct 197  Q
    |||||||||||||| | ||  || ||||||||||||||||||| |||||||||||| ||||| ||        |||||| ||||||   |||||||| ||    
T  11339826 accttcattgtgttaggtgcgaaagggtggatttagtcccacactgcctagagata-ggcctatgtagtgtactagtgtttataaatcctgggcagctct 11339728  T
Q  198 caccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||||||||||  |||||||||| ||| |||||| |||| |||||||||||||    
T  11339727 caccttacaagtcggttttgtaa-gtttagttaggcccaacccaaattctaag 11339676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 15820269 - 15820188
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||||| ||||| ||||||| ||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  15820269 attgcggcctttggtttgcctttattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 15820188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 35872850 - 35872902
Alignment:
Q  107 ccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagaga 159  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||| |||||||    
T  35872850 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagaga 35872902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 25441632 - 25441713
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaagggg-tggatttagtcccacat 149  Q
    |||||||| ||||| | ||||||||||||||||||  |||||| |||||||||| | |||||||| |||||||||||||||||    
T  25441632 attgcggcctttggttagccttcattgcagcctccaataccttgattgtgttggct-tcaaggggttggatttagtcccacat 25441713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 33456024 - 33456078
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaa 249  Q
    |||||||||||||   ||||||||||||||||||||| |||| ||||||||||||    
T  33456024 cctcaccttacaaaccggttttgtaaggttgagttaggcccaacccaaattctaa 33456078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 3004070 - 3003981
Alignment:
Q  75 gcatttggg-ttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatat 162  Q
    ||||||||| || ||||||| |||||||||   |||||||||||||||| ||| | ||| ||| |||||||||||| |||||||||||||    
T  3004070 gcatttgggctttccttcatcgcagcctccaacaccttcattgtgttgggtgtgaggggatgggtttagtcccacaatgcctagagatat 3003981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 33070110 - 33070179
Alignment:
Q  120 ggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgg 189  Q
    |||||| |||||||||||||||| ||||||| | ||||||||||||||  |||| |  ||||||||||||    
T  33070110 ggatgtaaaggggtggatttagttccacatttcttagagatatggcctaagtagagcttataaagtttgg 33070179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 18902015 - 18901951
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  18902015 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 18901951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 7252234 - 7252289
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    ||||| |||||||| |||||||||| ||||||||||| | || |||||||||||||    
T  7252234 cctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaag 7252289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 18959505 - 18959592
Alignment:
Q  77 atttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatg 163  Q
    ||||||||| |||||||||||||| || |  ||||||||||| ||| ||| | ||||||| ||||||| |||||  ||||||||||||    
T  18959505 atttgggttcccttcattgcagccaccagcgccttcattgtgctgggtgtgagggggtgggtttagtctcacatcacctagagatatg 18959592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 17509045 - 17509126
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | | ||||||||||||| |||||||    
T  17509045 attgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagccccacat 17509126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 21214015 - 21213970
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacattg 151  Q
    |||||||||||||||| | | | |||||||||||||||||||||||    
T  21214015 accttcattgtgttggctttgagggggtggatttagtcccacattg 21213970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 21373920 - 21373953
Alignment:
Q  70 ttgcggcatttgggttgccttcattgcagcctcc 103  Q
    |||||||||||| |||||||||||||||||||||    
T  21373920 ttgcggcatttgtgttgccttcattgcagcctcc 21373953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 28895589 - 28895630
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    ||||||||||||||  |||||||||||| |||||||||||||    
T  28895589 cctcaccttacaagccggttttgtaaggatgagttagaccca 28895630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 33080108 - 33080149
Alignment:
Q  120 ggatgtcaaggggtggatttagtcccacattgcctagagata 161  Q
    |||||| |||||||||||||||| |||||||| |||||||||    
T  33080108 ggatgtaaaggggtggatttagttccacattgtctagagata 33080149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 43169139 - 43169259
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||||| | || || | ||||| ||||||||||||   |||||||||||||||| | | |     
T  43169139 aaattccgccttaattgcggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggctttgag 43169238  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  43169239 ggggtggatttagtcccacat 43169259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 884120 - 884156
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    ||||||||||||||  |||||||||||||||||||||    
T  884120 cctcaccttacaagccggttttgtaaggttgagttag 884156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 3976622 - 3976558
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||| ||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  3976622 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 3976558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 5424823 - 5424783
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  5424823 cctcaccttacaagccggttttgtaaggatgagttagaccc 5424783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 10849532 - 10849496
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  10849532 cctcaccttacaagttggttttgtaaggatgagttag 10849496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 16007040 - 16007080
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  16007040 cctcaccttacaagccggttttgtaaggatgagttagaccc 16007080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 21214331 - 21214287
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacatt 150  Q
    |||||||||||||||| | | | ||||||||||||||||||||||    
T  21214331 accttcattgtgttggctttgagggggtggatttagtcccacatt 21214287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 31761195 - 31761231
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  31761195 cctcaccttacaagttggttttgtaaggatgagttag 31761231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 41590433 - 41590215
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||||||||||||||||| | ||||||| | | ||||||| ||| |||||||||||||||||||||||   ||||||||||||| || ||| |||    
T  41590433 aaattccgccttcattgcggtccgcacctagccgcctaattgcggaatt-gggttgccttcattgcagcctccaacaccttcattgtgtcgggtgtgaag 41590335  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||||| |||||| ||||||| |||||| |||||| ||||||||||| ||||||| |||| || |||||| |||||||| ||||||||||||||||||||    
T  41590334 gggtgggtttagttccacatttcctagaaatatggtctgtgtagtgt-tataaagcttggtcaaccctcatcttacaagctggttttgtaaggttgagtt 41590236  T
Q  230 agacccagcccaaattctaag 250  Q
     | |||| || ||||||||||    
T  41590235 tggcccaacctaaattctaag 41590215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 34626980 - 34626760
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||| |||||||||| ||||| ||||||||||| | ||||| |||| | ||||||||||||||||||||||   ||||||||| |||||| ||| |||    
T  34626980 aaattctgccttcattgtggtccgcccctagccacctaattgcagcatcttggttgccttcattgcagcctccaacaccttcattctgttgggtgtgaag 34626881  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    | |||||||||||| |||||| || ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||  | || |||||| || |||     
T  34626880 gagtggatttagtctcacatttcccagagatatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaagccgattctgtaagattaagta 34626781  T
Q  230 agacccagcccaaattctaag 250  Q
    ||  ||| |||||||||||||    
T  34626780 aggaccaacccaaattctaag 34626760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 12410342 - 12410510
Alignment:
Q  70 ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcc-tagagatatggcct 167  Q
    |||||||||||||||| ||||  |||||||||||   |||||||| ||||||| ||| |||| || ||||||||||||||||  | ||||||||||||||    
T  12410342 ttgcggcatttgggttacctttgttgcagcctccaacaccttcatcgtgttgggtgtgaaggagttgatttagtcccacattttcatagagatatggcct 12410441  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
     |||||||  |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||    
T  12410442 atgtagtgcttataaagtttgggcagccttcaccttacaaagtggttttgtaaggttgggttaggccca 12410510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 19810903 - 19810684
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||| ||||| |||| ||||||||||||||  | | |||||||||||||||||| |||||||||| ||||    |||||||||||||| | ||| |||    
T  19810903 aaattctgccttaattgtggtccacccctagctgcctaattgcggcatttgggttggcttcattgcaacctcgaacaccttcattgtgttaggtgtgaag 19810804  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    ||||| | | ||||||||||||||||||||||||||||||| | ||| ||||||| ||||||| || |||||||| |||  | ||||||||||||||| |    
T  19810803 gggtgcact-agtcccacattgcctagagatatggcctgtgcaatgtttataaagcttgggcaaccttcaccttagaagccgattttgtaaggttgagct 19810705  T
Q  230 agacccagcccaaattctaag 250  Q
    || |||| |||||||| ||||    
T  19810704 aggcccaacccaaattttaag 19810684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 19811217 - 19810997
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgta-ccttcattgtgttggatgtcaag 129  Q
    |||||| | |||||||| ||||  ||||||||| | | |||| ||||||||||||||||||||||||||||||    ||||| ||||||||| ||| |||    
T  19811217 aaattcagtcttcattgtggtctgcccctagccgcctaattgtggcatttgggttgccttcattgcagcctccaactccttcgttgtgttgggtgtgaag 19811118  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
      |||||||||||||||| ||||||||||||||||||||| |||||| | || || ||||||| ||||  |||||||||  |||||||||||||||| ||    
T  19811117 atgtggatttagtcccacgttgcctagagatatggcctgtttagtgtttttatagcttgggcaacccttgccttacaagccggttttgtaaggttgactt 19811018  T
Q  230 agacccagcccaaattctaag 250  Q
    || || | |||||||| ||||    
T  19811017 aggccgaacccaaattttaag 19810997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 40566468 - 40566284
Alignment:
Q  35 ttccgccttcattgcggtccacccctagccactgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggt 133  Q
    |||||||||||||| |||||||| || ||| |  ||||||||| |||||||||||||||| |||| |||   |||||||||||||||| ||| ||||| |    
T  40566468 ttccgccttcattgtggtccaccactggccccctattgcggcagttgggttgccttcattacagcttccaacaccttcattgtgttgggtgtgaagggat 40566369  T
Q  134 ggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgt 218  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||| || |||   |||| |||||||| ||||||||  ||||||||    
T  40566368 ggattcagtcccatattgcctagcgatatggcctgtgtagtgtttacaaaacgtgggaagccctcaacttacaagtcggttttgt 40566284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 17557829 - 17557709
Alignment:
Q  128 aggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgag 227  Q
    ||||||| ||||| |||||||||||||||||||||| |  ||||||||| ||||||| || |||| ||||||||||||||| || |||||||||||||||    
T  17557829 aggggtgaatttaatcccacattgcctagagatatgac--gtgtagtgtttataaagcttaggcaaccctcaccttacaagctgattttgtaaggttgag 17557732  T
Q  228 ttagacccagcccaaattctaag 250  Q
    |||| |||| |||||||||||||    
T  17557731 ttaggcccaacccaaattctaag 17557709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 18998609 - 18998825
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||| |||||| || ||||| |||||||||  |  ||||||| |||||||||  ||||||||||||| ||   ||||||  |||||||| ||| ||     
T  18998609 aaattcctccttcactgtggtccgcccctagccgtcaaattgcggaatttgggttttcttcattgcagccaccaacaccttcgatgtgttgggtgtgaaa 18998708  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgt-aaggttgagt 228  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||| |||| | || ||||||||| ||||| ||| ||||||||||    
T  18998709 gggtggatttagtcccacattgcctagagatatgacctatgtagtgtatataaagcttgagcagtcatc-ccttacaagctggttatgtaaaggttgagt 18998807  T
Q  229 tagacccagcccaaattc 246  Q
    ||| | || |||||||||    
T  18998808 tagtcacaacccaaattc 18998825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 7524985 - 7525105
Alignment:
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    ||||||||||||||  || |||| || ||| || ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7524985 gggtggatttagtcttacgttgcttaaagaaatcgcctgtgtagtgtttatgaagtttgggcagccctcaccttacaagctggttttgtaaggttgagtt 7525084  T
Q  230 agacccagcccaaattctaag 250  Q
    || | ||  ||||||||||||    
T  7525085 aggctcaatccaaattctaag 7525105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 19810066 - 19809951
Alignment:
Q  127 aaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttga 226  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||| ||| ||||||| |||||||||| ||||||||||||  | ||||||||||||||    
T  19810066 aaggggtggatt-agtcccacattgcctagatatatggtctgtgtaatgtttataaagcttgggcagccttcaccttacaagccgattttgtaaggttga 19809968  T
Q  227 gttagacccagcccaaa 243  Q
    ||||| |||| ||||||    
T  19809967 gttaggcccaacccaaa 19809951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 51515615 - 51515781
Alignment:
Q  35 ttccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa-ggg 131  Q
    |||||||||||||||||  | ||||||||| | | |||| ||||||||| ||||||||||||| ||||||   |||||||||||||||| ||| || |||    
T  51515615 ttccgccttcattgcggctctcccctagccgcctaattgtggcatttggattgccttcattgctgcctccaacaccttcattgtgttgggtgtgaaaggg 51515714  T
Q  132 gtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctc 198  Q
    ||||||||||||| ||||| |||||||||||| | |||||||||| |||| ||  ||||||||||||    
T  51515715 gtggatttagtccgacattacctagagatatgccatgtgtagtgtttatatagcatgggcagccctc 51515781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 18998329 - 18998489
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    ||||||||||||||||| | |||||   ||||||| | || ||||||||||||| ||| ||||||  || |||||| |||||||||||||||||| || |    
T  18998329 attgcggcatttgggttacattcatgaaagcctccatgacattcattgtgttgggtgtgaaggggcagacttagtctcacattgcctagagatattgctt 18998428  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtgg-ttttgtaaggttgag 227  Q
     |||||||| ||||||| ||| |||||||||||||||||||  || |||||||||||||||    
T  18998429 ttgtagtgtttataaagcttgagcagccctcaccttacaagccggtttttgtaaggttgag 18998489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 6868031 - 6868182
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||||||||||||||||  ||||||  | | | ||||| |||||||||||||| ||| ||||||||||   ||||||||| |||||| | | |||    
T  6868031 aaattccgccttcattgcggtctgcccctaatcgcctaattgcagcatttgggttgccctcactgcagcctccaacaccttcattttgttgggtttgaag 6868130  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtata 181  Q
    ||||||||||||||||||||| | ||||||||||||||||| ||||| ||||    
T  6868131 gggtggatttagtcccacattacttagagatatggcctgtgcagtgtttata 6868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 7908049 - 7907896
Alignment:
Q  33 aattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa-g 129  Q
    |||||| |||||||||| |||| ||||||||| | | |||| |||||||||||||||||||||||| ||||||  |  ||||||||||||| ||| || |    
T  7908049 aattcctccttcattgcagtcc-cccctagccgcctaattgtggcatttgggttgccttcattgcatcctccggcagtttcattgtgttgggtgtgaaag 7907951  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaag 184  Q
    ||||||||||||||||||||| |  ||||||||||| |||||||||| |||||||    
T  7907950 gggtggatttagtcccacatttctcagagatatggcatgtgtagtgtttataaag 7907896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 41590662 - 41590526
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttac 205  Q
    |||||||||||||||| ||| | |||||| |||||||||||||||||||||||||||| ||       ||| ||||||| ||||||| |||||| |||||    
T  41590662 accttcattgtgttgggtgtgagggggtgaatttagtcccacattgcctagagatatgacc-------tgtttataaagcttgggcaaccctcatcttac 41590570  T
Q  206 aaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||  ||||| |||||||||||||||  ||| |||||||||||||    
T  41590569 aagccggtttcgtaaggttgagttag-gccaacccaaattctaag 41590526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 5087963 - 5087831
Alignment:
Q  33 aattccgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaagg 130  Q
    ||||| ||||||||||||||||||||||||||  || |||| || ||||||||| ||||||||||| |||||   |||||||||||| || || | ||||    
T  5087963 aattctgccttcattgcggtccacccctagccgtctaattgtggtatttgggtttccttcattgcaacctccaacaccttcattgtgctgaatattaagg 5087864  T
Q  131 ggtggatttagtcccacattgcctagagatatg 163  Q
    |||||||| |||||| |||||| ||||||||||    
T  5087863 ggtggattcagtccctcattgcttagagatatg 5087831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 33248527 - 33248312
Alignment:
Q  41 cttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatt 138  Q
    ||||||||| |||| ||||||||  | | ||||||||||| ||||||| || ||||||  ||||   |||||||||||||||| ||| || |||||||||    
T  33248527 cttcattgcagtccgcccctagctgcctaattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatt 33248428  T
Q  139 tagtcccacattgcctaga-----gatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagac 233  Q
    ||||| |||||||||||||      |||||| ||||||||||| |||| || || |||| ||||||||||||||| ||||||| ||| || || |||| |    
T  33248427 tagtctcacattgcctagacatgtcatatggtctgtgtagtgtttatagagatttggcaaccctcaccttacaagctggttttctaatgtcga-ttaggc 33248329  T
Q  234 ccagcccaaattctaag 250  Q
     || |||||||||||||    
T  33248328 tcaacccaaattctaag 33248312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 33268699 - 33268484
Alignment:
Q  41 cttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatt 138  Q
    ||||||||| |||| ||||||||  | | ||||||||||| ||||||| || ||||||  ||||   |||||||||||||||| ||| || |||||||||    
T  33268699 cttcattgcagtccgcccctagctgcctaattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatt 33268600  T
Q  139 tagtcccacattgcctaga-----gatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagac 233  Q
    ||||| |||||||||||||      |||||| ||||||||||| |||| || || |||| ||||||||||||||| ||||||| ||| || || |||| |    
T  33268599 tagtctcacattgcctagacatgtcatatggtctgtgtagtgtttatagagatttggcaaccctcaccttacaagctggttttctaatgtcga-ttaggc 33268501  T
Q  234 ccagcccaaattctaag 250  Q
     || |||||||||||||    
T  33268500 tcaacccaaattctaag 33268484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 13978521 - 13978652
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccg-taccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    |||||| |||||| ||||||||||||||| |||||  ||| ||||||||||||| ||| ||||| ||  ||||||||||||||| ||||| ||||| |||    
T  13978521 attgcgacatttgtgttgccttcattgcatcctccaatacgttcattgtgttgggtgtgaagggatgtctttagtcccacattgtctagatatatgtcct 13978620  T
Q  168 gtgtagtgtgtataaagtttgggcagccctca 199  Q
    | ||| ||| ||| ||||||| ||||||||||    
T  13978621 gggtaatgtttatcaagtttgagcagccctca 13978652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 12581508 - 12581374
Alignment:
Q  73 cggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag-gggtggatttagtcccacattgcctagagatatggcctgtg 170  Q
    ||||||||||||||||||  || |||| |||   |||||||||||||||| ||| ||  |||||||||||||||||| ||||| | ||||||||| |||     
T  12581508 cggcatttgggttgcctttgtttcagcttccaacaccttcattgtgttgggtgtgaaatgggtggatttagtcccacgttgcccaaagatatggcatgtt 12581409  T
Q  171 tagtgtgtataaagtttgggcagccctcaccttac 205  Q
    |||||| |||||||  |||||||||||||||||||    
T  12581408 tagtgtttataaagcatgggcagccctcaccttac 12581374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 51188944 - 51188878
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgta 172  Q
    |||||||||||||||| | | |||||||||||||||||||||||||| |||||||||||||||||||    
T  51188944 accttcattgtgttgggtttgaaggggtggatttagtcccacattgcttagagatatggcctgtgta 51188878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 8000447 - 8000581
Alignment:
Q  69 attgcggcatttgggttgcctt--cattgcagcctccgt-accttcattgtgttggatgtcaa-ggggtggatttagtcccacattgcctagagatatgg 164  Q
    ||||||||||||||||||||||  ||||||||||||||  || |||||||||||||  ||||| |||||||||||| ||| ||||| | |||||||||||    
T  8000447 attgcggcatttgggttgccttttcattgcagcctccggcactttcattgtgttgggcgtcaaaggggtggatttattcctacatttcatagagatatgg 8000546  T
Q  165 c--ctgtgtagtgtgtataaagtttgggcagccct 197  Q
    |   |||||||||| |||| ||  |||||||||||    
T  8000547 catgtgtgtagtgtttatatagcatgggcagccct 8000581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 31305608 - 31305728
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||||||||||| | |  |  ||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | |     
T  31305608 aaattccgccttaattgcggtccacccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgag 31305707  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  31305708 ggggtggatttagtcccacat 31305728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 33879985 - 33879865
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaa 128  Q
    |||| ||||||| |||||||||||||||||| |||  |  ||||| | ||||| ||||||||||||||||||||   |||||||||||||||| | | |     
T  33879985 aaataccgcctttattgcggtccacccctagtcacctaaattgcgacctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgag 33879886  T
Q  129 ggggtggatttagtcccacat 149  Q
     ||||||||||||||||||||    
T  33879885 agggtggatttagtcccacat 33879865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 33964270 - 33964390
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac--tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaa 128  Q
    |||| ||||||| |||||||||||||||||| |||    |||||| | ||||| ||||||||||||||||||||   |||||||||||||||| | | |     
T  33964270 aaataccgcctttattgcggtccacccctagtcacctaaattgcgacctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgag 33964369  T
Q  129 ggggtggatttagtcccacat 149  Q
     ||||||||||||||||||||    
T  33964370 agggtggatttagtcccacat 33964390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 19459660 - 19459746
Alignment:
Q  70 ttgcggcatttgggttgccttcattgcagcctccgta-ccttcattgtgttggatgtcaaggggtggatttagtcccacattgccta 155  Q
    ||||||||||||||||||||  ||||||||||||    ||||||||||||||| ||| | ||||||| |||||||||||| ||||||    
T  19459660 ttgcggcatttgggttgcctaaattgcagcctccaactccttcattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 19459746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 347107 - 347160
Alignment:
Q  196 ctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaa 249  Q
    ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||    
T  347107 ctcaccttacaagctggttttgtaaggttgagttagggccaacccaaattctaa 347160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 13653364 - 13653425
Alignment:
Q  128 aggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgg 189  Q
    ||||||| |||||| ||||| |||| |||||||||||| |||||||||| ||||||||||||    
T  13653364 aggggtgaatttagacccactttgcttagagatatggcatgtgtagtgtttataaagtttgg 13653425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 11636276 - 11636204
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagcca-ctgattgcggcatttgggttgccttcattgcagcctcc 103  Q
    ||||||||| ||||||| ||||| || ||||||| || ||||| |||||||||||| ||||||||||||||||    
T  11636276 aaattccgctttcattgtggtccccctctagccatctaattgcagcatttgggttgtcttcattgcagcctcc 11636204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 40571537 - 40571640
Alignment:
Q  142 tcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagccca 241  Q
    ||||||||||| |||||||||||||   ||| ||  ||||||   ||| ||  |||||||||||||| |||||||||||||||||||||| ||||  |||    
T  40571537 tcccacattgcttagagatatggccgaagtactgcttataaaacctggacaatcctcaccttacaagttggttttgtaaggttgagttaggcccaatcca 40571636  T
Q  242 aatt 245  Q
    ||||    
T  40571637 aatt 40571640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 45264599 - 45264678
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccac 147  Q
    |||||||| ||||| |||||||| |||||||||||   |||||||||||||||| | | | |||||||||||||||||||    
T  45264599 attgcggcctttggtttgccttctttgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccac 45264678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 17558328 - 17558270
Alignment:
Q  145 cacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcacctt 203  Q
    ||||||||||||||||| ||| |||||||||| || || | ||||||||||||||||||    
T  17558328 cacattgcctagagatacggcttgtgtagtgtttaaaaggattgggcagccctcacctt 17558270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 369663 - 369702
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagacc 234  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  369663 cctcaccttacaagatggttttgtaaggatgagttagacc 369702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 13031182 - 13031127
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||||||||||||  |||||||||| |||||||||||  ||| |||||||||||||    
T  13031182 cctcaccttacaaactggttttgtagggttgagttaggtccaacccaaattctaag 13031127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 19609229 - 19609190
Alignment:
Q  192 agccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  19609229 agccctcaccttacaagccggttttgtaaggttgagttag 19609190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 14623152 - 14623282
Alignment:
Q  78 tttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgt 176  Q
    ||||||||||||||||||||||||||   |||||||||||||||| ||| | || ||| |||| |||   || || || || ||||||| |  ||||||     
T  14623152 tttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtaagggtgtgaattttgtcgagcaatgtcttgatatatggcttaagtagtgc 14623251  T
Q  177 gtataaagtttgggcagccctcaccttacaa 207  Q
     ||||||| |||||| | |||||||||||||    
T  14623252 ttataaagcttgggctggcctcaccttacaa 14623282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 4022293 - 4022212
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||||| ||||| |||||||| | ||| |||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  4022293 attgcggcctttggtttgccttcgtcgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 4022212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 8520261 - 8520180
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||||||||||||||||    ||||||||||||||| | | | |||||||||||||||||||||    
T  8520261 attgcgacctttggttagccttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtcccacat 8520180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 20735458 - 20735539
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | | |||||||||||| ||||||||    
T  20735458 attgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttaatcccacat 20735539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 43938947 - 43938910
Alignment:
Q  197 tcaccttacaaggtggttttgtaaggttgagttagacc 234  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  43938947 tcaccttacaagctggttttgtaaggatgagttagacc 43938910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 17419850 - 17419890
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  17419850 cctcaccttacaagccggttttgtaaggatgagttagaccc 17419890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 21638307 - 21638271
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  21638307 cctcaccttacaagatggttttgtaaggatgagttag 21638271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 33342319 - 33342279
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  33342319 cctcaccttacaagccggttttgtaaggatgagttagaccc 33342279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 33879819 - 33879783
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  33879819 cctcaccttacaagctggttttgtaaggatgagttag 33879783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 33964436 - 33964472
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  33964436 cctcaccttacaagctggttttgtaaggatgagttag 33964472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 35926289 - 35926253
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  35926289 cctcaccttacaagctggttttgtaaggatgagttag 35926253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 43361593 - 43361553
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  43361593 cctcaccttacaagccggttttgtaaggatgagttagaccc 43361553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 43361798 - 43361758
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  43361798 cctcaccttacaagccggttttgtaaggatgagttagaccc 43361758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 43421796 - 43421760
Alignment:
Q  194 ccctcaccttacaaggtggttttgtaaggttgagtta 230  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  43421796 ccctcaccttacaagttggttttgtaaggatgagtta 43421760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 45403503 - 45403539
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  45403503 cctcaccttacaagctggttttgtaaggatgagttag 45403539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 1206070 - 1205849
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaag 129  Q
    |||||| |||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||| | |||||||| ||||| | ||| |||    
T  1206070 aaattctgccttcattgcggtccgcccctagccgcctaattgcggcatttgggttgccttcattgcagcctccagcaccttcatcgtgttaggtgtgaag 1205971  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtg-tgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagt 228  Q
    |||||||||||||||  || ||| |||||||||||||| ||||||| | ||||||  ||||||||| ||| | |||||||  ||| ||||||||||||||    
T  1205970 gggtggatttagtccatcaatgcttagagatatggcct-tgtagtgttttataaaacttgggcagcactcgcattacaagccggtcttgtaaggttgagt 1205872  T
Q  229 tagacccagcccaaattctaagt 251  Q
    |||  ||| ||||||||||||||    
T  1205871 tagctccaacccaaattctaagt 1205849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 1206307 - 1206165
Alignment:
Q  108 cttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaa 207  Q
    |||||||||||||| ||| ||||| || ||||||||||||||| |||||||||||| |||||||||||| ||||||| || |||||||||||||||||||    
T  1206307 cttcattgtgttgggtgtgaagggatgaatttagtcccacatttcctagagatatgtcctgtgtagtgtttataaagcttaggcagccctcaccttacaa 1206208  T
Q  208 ggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    | ||| ||||||||| | ||||||  ||| |||||||||||||    
T  1206207 gctggatttgtaaggctaagttaggtccaacccaaattctaag 1206165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 18286821 - 18286977
Alignment:
Q  69 attgcggcattt-gggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcc 166  Q
    |||||||||||| ||||||  ||||||||| |||||   |||||||  ||||||| ||| ||||||| |||||||||||||||| |||||||||||||||    
T  18286821 attgcggcattttgggttgggttcattgcatcctccaacaccttcaccgtgttgggtgtgaaggggttgatttagtcccacatttcctagagatatggcc 18286920  T
Q  167 tgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggtt 224  Q
    | |||||||| ||||||| ||||| ||| ||| ||||||||   ||||||||||||||    
T  18286921 tatgtagtgt-tataaagcttggggagcactcgccttacaaaccggttttgtaaggtt 18286977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 1205756 - 1205577
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcct-ccgtaccttcattgtgttggatgtcaag 129  Q
    ||||||| |||||||||| |||||||||||||| | | |||| |||||||||||| ||||||||||||||| |   || ||||||||||||| ||| |||    
T  1205756 aaattccaccttcattgcagtccacccctagccgcctaattgtggcatttgggtttccttcattgcagcctacaacactttcattgtgttgggtgtgaag 1205657  T
Q  130 gggtggatttagtcccacattgcc-tagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaag 208  Q
    ||||||||| ||||||||  |||| | |||||||||| | ||||||||   ||||| | |||||||| ||||| ||||||    
T  1205656 gggtggattcagtcccaccctgcctttgagatatggcatatgtagtgttcgtaaagctggggcagccttcaccctacaag 1205577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 16509712 - 16509895
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgta-ccttcatt-gtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcc 166  Q
    |||||| |||||||||||||||||||||||| | |    |||||||| ||| ||||||| || |||||||||||||||||||||||||| ||| |||||     
T  16509712 attgcgacatttgggttgccttcattgcagctttcaacgccttcatttgtgatggatgtgaacgggtggatttagtcccacattgcctaaagacatggct 16509811  T
Q  167 tgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |  ||||||  ||||||||||  || |  |||| | ||||||  ||||| |||||||||||||||| ||| || ||||| ||||    
T  16509812 taagtagtgcttataaagttttagcggttctcaacatacaagccggtttcgtaaggttgagttagatccaaccaaaattataag 16509895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 9602193 - 9602078
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||| |||||||||| |||  ||||||||| | | ||||| |||||||| ||||||||||| |||| |||   |||||||||||||||| ||| |||    
T  9602193 aaattccaccttcattgcagtctgcccctagccgcctaattgcagcatttggattgccttcattccagcttccaacaccttcattgtgttgggtgtgaag 9602094  T
Q  130 gggtggatttagtccc 145  Q
    ||||||||||||||||    
T  9602093 gggtggatttagtccc 9602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 12134651 - 12134570
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||||||||||| | | | |||||||| ||||||||||||    
T  12134651 attgcggcctttggtttgccttcattgcagcctccaataccttcattgtgttggctttgacggggtggacttagtcccacat 12134570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 130824 - 130761
Alignment:
Q  81 gggttgccttcattgcagcctccgt--accttcattgtgttggatgtcaaggggtggatttagt 142  Q
    |||||||||||||||||||||||    |||||||||||||||| ||| ||||||||||||||||    
T  130824 gggttgccttcattgcagcctccaacaaccttcattgtgttgggtgtgaaggggtggatttagt 130761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 32078 - 31960
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaag 129  Q
    ||||||| |||| |||||| ||||||||||| ||| | ||||||||||||  |||||||||||||||| ||||   ||||||||| |||||| | | | |    
T  32078 aaattccacctttattgcg-tccacccctagtcacctaattgcggcatttaagttgccttcattgcagtctccaacaccttcattttgttggctttgagg 31980  T
Q  130 gggtggatttagtcccacat 149  Q
    ||||||||||||||| ||||    
T  31979 gggtggatttagtccaacat 31960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 26401051 - 26400945
Alignment:
Q  109 ttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaag 208  Q
    ||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||   || ||| | |||||||  |||| ||| ||||||||||||     
T  26401051 ttcattgtgttggatgtgaatgg-tggatatagtcccacattgcttagagatatggcacatgcagtttttataaagcgtgggaagctctcaccttacaac 26400953  T
Q  209 gtggtttt 216  Q
     |||||||    
T  26400952 ctggtttt 26400945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 10418542 - 10418425
Alignment:
Q  35 ttccgccttcattgcggtccacccctagccac--tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggg 131  Q
    ||||||||| |||||||||| ||||||| | |  | ||||||   ||||| | ||||||||||||||||||   |||||||||||||||| | | | |||    
T  10418542 ttccgccttaattgcggtccgcccctagtcgccttaattgcgatctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggg 10418443  T
Q  132 gtggatttagtcccacat 149  Q
    ||||||||||||||||||    
T  10418442 gtggatttagtcccacat 10418425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 24055325 - 24055196
Alignment:
Q  23 aagtgttacaaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgtt 119  Q
    |||||||  |||||| ||||| |||||||||| ||||||| | |  |  ||||| | ||||| | ||||||||||||||||||   ||||||||||||||    
T  24055325 aagtgttggaaattctgccttaattgcggtccgcccctagtcgcctaaattgcgccctttggttagccttcattgcagcctccaacaccttcattgtgtt 24055226  T
Q  120 ggatgtcaaggggtggatttagtcccacat 149  Q
    || | | | |||||||||||||||||||||    
T  24055225 ggctttgagggggtggatttagtcccacat 24055196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 15544650 - 15544496
Alignment:
Q  76 catttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagt 174  Q
    ||||||||||||||||||||||||||||  ||||||| || |||||| |||  | |||| |||||||||||  |||  ||||| ||| | | ||||| ||    
T  15544650 catttgggttgccttcattgcagcctccaataccttcgttatgttggttgt--aagggtagatttagtcccgaattatctagaaatacgacatgtgtggt 15544553  T
Q  175 gtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    || | ||||| |||| || | ||||||| |||||  ||||||||||| || ||||||    
T  15544552 gtttgtaaagcttggtcaacactcacctcacaagccggttttgtaagattcagttag 15544496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 130744 - 130691
Alignment:
Q  178 tataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||||||| || |||||||||   |||||| |||||||||||||    
T  130744 tataaagtttgggcagccatcgccttacaagccagttttgcaaggttgagttag 130691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 1408967 - 1409028
Alignment:
Q  89 ttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  1408967 ttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 1409028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 9156231 - 9156154
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaa 183  Q
    ||||||| |||||| | | | |||||||||||||| |||||||| || | ||||||| || |||||||||| ||||||    
T  9156231 accttcactgtgttaggtttgaaggggtggatttattcccacatcgctttgagatatagcatgtgtagtgtttataaa 9156154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 9237095 - 9237256
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctaga---gatatgg 164  Q
    ||||||| |||||  ||||||||||||||  ||||   |||||||||||||||  ||| |||  ||||||||||| ||||||||||| ||    ||||||    
T  9237095 attgcggtatttgtcttgccttcattgcactctccaacaccttcattgtgttgtgtgtgaagtagtggatttagttccacattgcctcgatattatatgg 9237194  T
Q  165 cctgtgtagtgtgtataaagtttgggcagcc---ctcaccttacaaggtggttttgtaaggt 223  Q
    |  ||||||||| ||||||| |||| || ||   ||||||||||||   |||||||||||||    
T  9237195 ctcgtgtagtgtttataaagattggccaacccagctcaccttacaaatcggttttgtaaggt 9237256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 18612811 - 18612754
Alignment:
Q  169 tgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttga 226  Q
    |||||||| || ||||||||||||||| ||||||||||||  | ||||||||| ||||    
T  18612811 tgtagtgtttaaaaagtttgggcagccttcaccttacaagccgcttttgtaagattga 18612754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 19054429 - 19054510
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | | |||||||| ||||||||||||    
T  19054429 attgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtcccacat 19054510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 5269314 - 5269274
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  5269314 cctcaccttacaagccggttttgtaaggatgagttagaccc 5269274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 19712650 - 19712614
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  19712650 cctcaccttacaagctggttttgtaaggatgagttag 19712614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 24558851 - 24558887
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  24558851 cctcaccttacaagctggttttgtaaggatgagttag 24558887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 48046298 - 48046461
Alignment:
Q  75 gcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa-ggggtggatttagtcccacattgcctagagatatggcctgtgta 172  Q
    ||||| ||||||||||||||||| |||||   ||||||| | |||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  48046298 gcattggggttgccttcattgcaacctccaacaccttcactatgttgggtgtgaaaggggtggatttagtcccacattgcctagagatatggcatgtgta 48046397  T
Q  173 gtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    |||| || ||||||||||| ||||||||||||||||  |||||||||| |||||||||| ||||    
T  48046398 gtgtttacaaagtttgggccgccctcaccttacaagccggttttgtaacgttgagttaggccca 48046461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 80 - 250
Target Start/End: Complemental strand, 30491108 - 30490940
Alignment:
Q  80 tgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgt 178  Q
    ||||||||||||||||||||||||   ||||||| |||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||  |||| |    
T  30491108 tgggttgccttcattgcagcctccaacaccttcaatgtgttgggtgtgaaggggtggatttagtcc-acattgcctagatatatggcctgtg--gtgttt 30491012  T
Q  179 ataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    ||||||| |||| | |||||||||||||||  | ||| ||||||||||||||| |||| |||||||||||||    
T  30491011 ataaagtctgggaacccctcaccttacaagccgttttcgtaaggttgagttaggcccaacccaaattctaag 30490940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 243
Target Start/End: Complemental strand, 52043284 - 52043071
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||| |||||||||| |||  |||||| |||| | ||||||| ||||| |||| ||||||||||||||||   ||||||||||| | || ||| |||    
T  52043284 aaattccaccttcattgcagtctgcccctaaccacctaattgcggaatttgtgttgtcttcattgcagcctccaacaccttcattgtatcgggtgtgaag 52043185  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    |||||||||||||| ||||||||| | |||||||| |||| |||||| ||||||| ||  |||||||||||||||||||  |||||| ||| ||||||||    
T  52043184 gggtggatttagtctcacattgccaaaagatatggtctgtttagtgtttataaagcttatgcagccctcaccttacaagccggttttataaagttgagtt 52043085  T
Q  230 agacccagcccaaa 243  Q
    |  |||| ||||||    
T  52043084 aagcccaacccaaa 52043071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 26943077 - 26942872
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||||| |||| |||||| ||||||||| | | ||||| | |||||| ||| |||||||||||||| |   ||||| |||||||||| ||| |||    
T  26943077 aaattccgcctacatttcggtccgcccctagccgcctaattgcagtatttggattgtcttcattgcagccttcaacacctttattgtgttgggtgtgaag 26942978  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
     |||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||| || |||| |||||||||||||||  | |||||||||| ||||||    
T  26942977 aggtgaatttagtctcacat-gcctagagatatggtctgtgtagtgtttataaagcttaggcacccctcaccttacaagccgattttgtaaggatgagtt 26942879  T
Q  230 agaccca 236  Q
    || ||||    
T  26942878 aggccca 26942872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 3137787 - 3137622
Alignment:
Q  83 gttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtata 181  Q
    ||||||||||||||||||| |   |||||||||||||||| ||| ||  |||||||||||||| ||||| |||||||||||||||| ||||  |||||||    
T  3137787 gttgccttcattgcagcctgcaacaccttcattgtgttgg-tgtgaattggtggatttagtccgacattccctagagatatggcctatgta--gtgtata 3137691  T
Q  182 aagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    ||| ||| |||||||||||||| ||||  |||||| || ||| |||||||  ||| |||||||||||||    
T  3137690 aagcttgtgcagccctcaccttgcaagccggttttttatggtcgagttaggtccaacccaaattctaag 3137622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 23311592 - 23311470
Alignment:
Q  114 tgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggt 213  Q
    |||||||| | | |||||||||||||||||| ||||||  |||||||||||| |||||||||| |||||||  ||||||||| | ||||||||||  |||    
T  23311592 tgtgttgggtttgaaggggtggatttagtcctacattgtttagagatatggcatgtgtagtgtttataaagcgtgggcagcctttaccttacaagccggt 23311493  T
Q  214 tttgtaaggttgagttagaccca 236  Q
    ||||||||| ||| |||| ||||    
T  23311492 tttgtaaggatgacttaggccca 23311470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 22870552 - 22870758
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||||| ||||| ||||||||||||||| | | |||||  ||| |||||||| ||||||||| ||| |   || |||||||||| |  | | |||    
T  22870552 aaattccgcct-cattgtggtccacccctagccgcctaattgcaccatctgggttgctttcattgcaaccttcaacacattcattgtgtagagtttgaag 22870650  T
Q  130 gggtggatttagtcccacattgcctagagatatggcc-tgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagt 228  Q
    | ||||||||||||||||||||| ||||||||||||| | |  ||||| |||||||||||||||||||||| |||| |||  | |||| ||||| |||||    
T  22870651 gtgtggatttagtcccacattgcttagagatatggccatttagagtgtttataaagtttgggcagccctcatcttataagccgattttataaggatgagt 22870750  T
Q  229 tagaccca 236  Q
    ||| ||||    
T  22870751 taggccca 22870758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 54595507 - 54595370
Alignment:
Q  106 accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttac 205  Q
    |||||||||||||||| ||| ||||| |||| ||| |||||| ||||||||||| | ||| |||||||||  | ||||| | ||||||||||||||||||    
T  54595507 accttcattgtgttggttgtgaagggatggaattaatcccacgttgcctagagacacggcttgtgtagtgcttttaaagctcgggcagccctcaccttac 54595408  T
Q  206 aaggtggttttgtaaggttgagttagacccagcccaaa 243  Q
    |||   ||||||  |||||||||||  |||| ||||||    
T  54595407 aagcaagttttgcgaggttgagttaagcccaacccaaa 54595370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 53738414 - 53738295
Alignment:
Q  33 aattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    ||||||||||| |||||||||||||||||| | |  |  ||||||| ||||| ||||||||||||||||||||   |||||||||||||||| | | | |    
T  53738414 aattccgcctttattgcggtccacccctagtcgcctaaattgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagg 53738315  T
Q  130 gggtggatttagtcccacat 149  Q
    ||||||||||||||||||||    
T  53738314 gggtggatttagtcccacat 53738295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 29669893 - 29669765
Alignment:
Q  23 aagtgttacaaattccgccttcattgcggtccacccctagccac--tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgtt 119  Q
    |||||||  |||||||||||| |||||||||||||||||| | |  | |||||||| ||||| | ||||||||||||||||||   ||||||||||||||    
T  29669893 aagtgttggaaattccgccttaattgcggtccacccctagtcgccttaattgcggcctttggttagccttcattgcagcctccaacaccttcattgtgtt 29669794  T
Q  120 ggatgtcaaggggtggatttagtcccacat 149  Q
    || | |  ||||||||||||||||||||||    
T  29669793 ggct-ttgaggggtggatttagtcccacat 29669765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 3137107 - 3136931
Alignment:
Q  74 ggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgta 172  Q
    ||||||| |||||||||||||| |||||||   | | |||||||| ||| |   || |||||||||||||||||||||||||||||| ||||||| || |    
T  3137107 ggcatttaggttgccttcattgtagcctccaacatcctcattgtgctgggttcgaatgggtggatttagtcccacattgcctagaga-atggcctatgca 3137009  T
Q  173 gtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||| |||| || ||||  | |||||||||||||||  ||| ||||| |||||||| ||  ||| |||| ||||||||    
T  3137008 gtgtttatatagcttggagaaccctcaccttacaagccggtgttgtagggttgagtcaggtccaacccatattctaag 3136931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 46332740 - 46332622
Alignment:
Q  32 aaattccgccttcattgcggtccaccccta-gccac-tgattgcggcatttgggttgccttcattgcagcc-tccgtaccttcattgtgttggatgtcaa 128  Q
    ||||| ||||||||||||||||| |||||| ||| | | |||||||||||||||||||||||||||||||| ||   || |||||||  |||| | | ||    
T  46332740 aaatttcgccttcattgcggtccgcccctaagccgcctaattgcggcatttgggttgccttcattgcagccttcaacacgttcattggattgggttttaa 46332641  T
Q  129 ggggtggatttagtcccac 147  Q
    |||||||||||||||||||    
T  46332640 ggggtggatttagtcccac 46332622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 54595267 - 54595145
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||||||||||||||||| ||  |||||||  | | ||||||||||||  ||||||||||||||| |||||   ||||||||||||  || ||| |||    
T  54595267 aaattccgccttcattgcggaccgtccctagctgcctaattgcggcatttaagttgccttcattgcaacctccaacaccttcattgtgcggggtgtgaag 54595168  T
Q  130 gggtggatttagtcccacattgc 152  Q
    |||||||| ||||||||||||||    
T  54595167 gggtggatatagtcccacattgc 54595145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 26942775 - 26942679
Alignment:
Q  50 ggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcc 144  Q
    ||||| ||||||||||| | ||||||| |||||||||| |||||||||| |||||   || ||||||||||||| ||| ||||||||||||||||||    
T  26942775 ggtccgcccctagccacctaattgcggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtgtgaaggggtggatttagtcc 26942679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 19190842 - 19190761
Alignment:
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgt---ataaagtttgggcagccctcaccttacaag 208  Q
    ||||||||||||||||||||| | || |||||||||||||||||||| |   ||||||  |||||| |||||||||||||||    
T  19190842 gggtggatttagtcccacattacttatagatatggcctgtgtagtgtttataataaagaatgggcaaccctcaccttacaag 19190761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 29669569 - 29669450
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac--tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  | ||||| || ||||| | ||||||||||||||||||   |||||||||||||||| | |  |    
T  29669569 aaattccgccttaattgcggtccgcccctagtcgccttaattgctgcctttggttagccttcattgcagcctccaacaccttcattgtgttggct-ttga 29669471  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  29669470 ggggtggatttagtcccacat 29669450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 15665088 - 15665170
Alignment:
Q  69 attgcggcatttgggtt-gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | |||||||| ||||||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  15665088 attgcgacctttgggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 15665170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 46676670 - 46676736
Alignment:
Q  184 gtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||||||||  |||||||||||||| |||||||||| |||||||||||  ||| |||||||| ||||    
T  46676670 gtttgggcaatcctcaccttacaagatggttttgtagggttgagttaggtccaacccaaattttaag 46676736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 36558673 - 36558553
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac--tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||| ||||| ||||| |||| ||||||| |||  | |||||||| ||||| |||||||||| ||| |||||   ||||||| |||||||| | | |     
T  36558673 aaattctgccttaattgcagtccgcccctagtcaccttaattgcggcctttggtttgccttcatagcaacctccaacaccttcactgtgttggctttgag 36558574  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  36558573 ggggtggatttagtcccacat 36558553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 43972291 - 43972372
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||||| ||||  ||||||||||||||||||||   |||||||||||||||| | | | |||||| ||||||||||||||    
T  43972291 attgcggcctttgatttgccttcattgcagcctccaacaccttcattgtgttggttttgagggggtgaatttagtcccacat 43972372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 50857909 - 50858029
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||||||||||| | |  |  ||||| | || || | ||||| ||||||||||||   |||||||||||||||| | | |     
T  50857909 aaattccgccttaattgcggtccacccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggctttgag 50858008  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  50858009 ggggtggatttagtcccacat 50858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 50858225 - 50858345
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||||||||||| | |  |  ||||| | || || | ||||| ||||||||||||   |||||||||||||||| | | |     
T  50858225 aaattccgccttaattgcggtccacccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggctttgag 50858324  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  50858325 ggggtggatttagtcccacat 50858345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 26942568 - 26942464
Alignment:
Q  42 ttcattgcggtccacccctagcc-actgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaaggggtggattt 139  Q
    |||||||||||||||||||||||  || |||  || |||||||||| |||||||||| |||||   || ||||||||||||| | | |||||||||||||    
T  26942568 ttcattgcggtccacccctagccgcctaattagggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtatgaaggggtggattt 26942469  T
Q  140 agtcc 144  Q
     ||||    
T  26942468 tgtcc 26942464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 45427403 - 45427339
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  45427403 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 45427339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 3137356 - 3137297
Alignment:
Q  45 attgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctcc 103  Q
    ||||| |||| ||||||||| | |||||||| ||||| ||||||||||||||||||||||    
T  3137356 attgctgtccgcccctagcctcctgattgcgacatttaggttgccttcattgcagcctcc 3137297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 50830758 - 50830704
Alignment:
Q  194 ccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaa 249  Q
    ||||||||| |||||  ||||||||||||||||||||| |||| ||||||||||||    
T  50830758 ccctcacctgacaagc-ggttttgtaaggttgagttaggcccaacccaaattctaa 50830704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 32988486 - 32988357
Alignment:
Q  23 aagtgttacaaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgtt 119  Q
    |||||||  |||||||||||| |||||||||| || |||| |||  |  ||||| | ||||| | ||||||||||||||| ||   ||||||||||||||    
T  32988486 aagtgttggaaattccgccttaattgcggtccgccgctagtcacctaaattgcgacttttggttagccttcattgcagcccccaacaccttcattgtgtt 32988387  T
Q  120 ggatgtcaaggggtggatttagtcccacat 149  Q
    || | | | | |||||||||||||||||||    
T  32988386 ggctttgaggtggtggatttagtcccacat 32988357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 43971984 - 43972054
Alignment:
Q  78 tttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccac 147  Q
    ||||| || |||||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||    
T  43971984 tttggtttaccttcattgcagcctccaacaccttcattgtgttggctttaagggggtggatttagtcccac 43972054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 55253345 - 55253399
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaa 249  Q
    ||||||||||||||  |||||||||||||||||||||  | |||| |||||||||    
T  55253345 cctcaccttacaagtcggttttgtaaggttgagttagctcaagccaaaattctaa 55253399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 56509548 - 56509626
Alignment:
Q  72 gcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||| ||||| |||||||||||||||| |||   |||||||||||||||| | | | |||||||||||||||| ||||    
T  56509548 gcggcctttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcctacat 56509626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 991140 - 991221
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||| ||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  991140 attgcgacctttggttagccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 991221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 37494467 - 37494414
Alignment:
Q  178 tataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    ||||||| |||||||| ||||||||||||||  | |||| ||||||||||||||    
T  37494467 tataaagcttgggcagtcctcaccttacaagtcgattttataaggttgagttag 37494414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 43760640 - 43760697
Alignment:
Q  188 gggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaatt 245  Q
    |||||| |||||||||| ||| |||| ||||| ||||||||||||| || ||||||||    
T  43760640 gggcagtcctcaccttataagttggtattgtagggttgagttagactcaacccaaatt 43760697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 991267 - 991307
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  991267 cctcaccttacaagccggttttgtaaggatgagttagaccc 991307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 13254358 - 13254402
Alignment:
Q  107 ccttcattgtgttggatgtcaaggggtggatttagtcccacattg 151  Q
    ||||||||||||||| | | | |||||||||||||||||||||||    
T  13254358 ccttcattgtgttggctttgagggggtggatttagtcccacattg 13254402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 22823947 - 22823899
Alignment:
Q  194 ccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaa 242  Q
    |||||||||||||||  ||||||||| ||||||||||| |||| |||||    
T  22823947 ccctcaccttacaagccggttttgtacggttgagttaggcccaccccaa 22823899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 27117265 - 27117225
Alignment:
Q  196 ctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    |||||||||||||  |||||||||||| |||||||||||||    
T  27117265 ctcaccttacaagtcggttttgtaaggatgagttagaccca 27117225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 29113512 - 29113548
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  29113512 cctcaccttacaagctggttttgtaaggatgagttag 29113548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 34206034 - 34205998
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  34206034 cctcaccttacaagctggttttgtaaggatgagttag 34205998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 35399298 - 35399262
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35399298 cctcaccttacaagccggttttgtaaggttgagttag 35399262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 35399457 - 35399421
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35399457 cctcaccttacaagccggttttgtaaggttgagttag 35399421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 53740135 - 53740199
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||| ||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  53740135 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 53740199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 39225197 - 39225011
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-----accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatg 163  Q
    |||||||||||||||||||||||| ||||||||||       |||||||||||||||| ||| |||| |||| ||||||||| |||||||||||||||||    
T  39225197 attgcggcatttgggttgccttcactgcagcctccaacatacaccttcattgtgttgggtgtgaaggcgtgggtttagtcccgcattgcctagagatatg 39225098  T
Q  164 gcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    |||| |||||||  ||||||| ||||| ||| ||| ||||||||   ||| ||||||||||||||||| |||| |||||||||||||    
T  39225097 gcctttgtagtgcatataaagattgggaagctctcgccttacaaaccggtcttgtaaggttgagttaggcccaacccaaattctaag 39225011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 34250558 - 34250352
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||||||||| |||||||||  | ||||||| | | |||||| ||||||||||||||||||||||||||||   ||||| |||||||| | | | |||    
T  34250558 aaattccgccttaattgcggtcagctcctagccgcctaattgcgacatttgggttgccttcattgcagcctccaacaccttaattgtgttaggtttgaag 34250459  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    ||||| |||| |||||||||||| ||||||||| |  |||||||| |  |||||| |||| || |||||||||||||||  |||||||||||| ||||||    
T  34250458 gggtgaatttcgtcccacattgcttagagatattgattgtgtagttttaataaagcttggacaaccctcaccttacaagtcggttttgtaaggatgagtt 34250359  T
Q  230 agaccca 236  Q
    || ||||    
T  34250358 aggccca 34250352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 51917822 - 51917977
Alignment:
Q  75 gcatttgggttgccttcattgcagcctccgta-ccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtag 173  Q
    ||||||||||||||||||||||| ||| |    |||||||| |||||  ||| || ||||||||||||||| |||||||||||||||||||| | |||||    
T  51917822 gcatttgggttgccttcattgcaaccttcaacgccttcattatgttgagtgtgaaagggtggatttagtcctacattgcctagagatatggcatatgtag 51917921  T
Q  174 tgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagtt 229  Q
    ||| ||||||| |||||| ||||||| ||||||||   ||||||||||| ||||||    
T  51917922 tgtttataaagcttgggccgccctcagcttacaagccagttttgtaaggatgagtt 51917977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 25568440 - 25568612
Alignment:
Q  76 catttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagt 174  Q
    |||||||||||||| |||||||||||||   ||||||  |||||||| ||| ||||||||| |||||  |||||||||||||||| ||| ||| ||||||    
T  25568440 catttgggttgcctacattgcagcctccaacaccttctctgtgttgggtgtgaaggggtgggtttagcaccacattgcctagagacatgacctttgtagt 25568539  T
Q  175 gtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattct 247  Q
    || ||||||  |||||||||  ||||||||| ||  ||||| || |||||||||||| ||||  |||||||||    
T  25568540 gtttataaaccttgggcagctttcaccttactagccggtttcgttaggttgagttaggcccaaaccaaattct 25568612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 250
Target Start/End: Original strand, 54861463 - 54861643
Alignment:
Q  71 tgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgt 169  Q
    ||||||||  |||||| ||||||||||||||||   |||||| ||||||||| ||| ||||||||||||||||| ||| |||||| || ||||||| | |    
T  54861463 tgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatat 54861562  T
Q  170 gtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 250  Q
    | ||||| ||||||| ||||| |||  | |||||||||| | ||||||| |||||||||||  |||| |||||||| ||||    
T  54861563 gcagtgtttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaag 54861643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 662625 - 662821
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaag 129  Q
    |||||||||||  |||||||||| ||||||| | | | |||||| ||||||||||||||||||||||||||||   ||||| |||||||||| | | |||    
T  662625 aaattccgccta-attgcggtccgcccctagtcgcctaattgcgccatttgggttgccttcattgcagcctccaacacctttattgtgttgggtttgaag 662723  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagt 228  Q
    |||| ||||||||||||| || | |||||||||| |||||||||||| ||| |||| || | |||||||||  |||||  || |||||||||| |||||    
T  662724 gggtcgatttagtcccacttttcttagagatatgacctgtgtagtgtttatgaagtatgtg-agccctcactgtacaaactgattttgtaaggatgagt 662821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 351081 - 351258
Alignment:
Q  35 ttccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctccg----taccttcattgtgttggatgtcaag 129  Q
    |||||||||| ||||| ||||||||||| | | | |||||||||||||  ||||||| |||||||||| |     ||||||||||||||||  | | |||    
T  351081 ttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttgttttgccttaattgcagccttcaataataccttcattgtgttgagtttgaag 351180  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaa 207  Q
    |||||| |||||||||||||||| || |||| || | |||||||||| |||||||  ||||||||||||| |||||||    
T  351181 gggtggctttagtcccacattgcttacagatgtgacatgtgtagtgtttataaagcatgggcagccctcatcttacaa 351258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 35035036 - 35035204
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 167  Q
    |||||| |||||| ||||||||| ||||| ||| |   |||||||||||||| | | | |||||||||| |||||| |||||| | |||||||||||| |    
T  35035036 attgcgacatttgagttgccttcgttgcaaccttcaacaccttcattgtgttaggtttgaaggggtggacttagtctcacatttcttagagatatggctt 35035135  T
Q  168 gtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    ||||  | | ||||||| ||||||||||||| | |||||||  |||||||| ||| |||||||| ||||    
T  35035136 gtgttctatttataaagcttgggcagccctctctttacaagtcggttttgttaggatgagttaggccca 35035204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 14170203 - 14170086
Alignment:
Q  35 ttccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggg 131  Q
    ||||||||| ||||||| || ||||||||| |  |  ||||||||||||| |||||||||||||||||||| | |||||||||||||||| | | | |||    
T  14170203 ttccgcctttattgcggcccgcccctagccgcctaaattgcggcatttggtttgccttcattgcagcctccatcaccttcattgtgttggctttgagggg 14170104  T
Q  132 gtggatttagtcccacat 149  Q
     |||||||||||||||||    
T  14170103 ctggatttagtcccacat 14170086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 50070552 - 50070712
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac-tgattgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaag 129  Q
    ||||| ||||||||||| ||||||||| ||||||| | ||||| ||||||||||  |||||||||||||||||   ||||||| ||| |||| ||| |||    
T  50070552 aaatttcgccttcattgtggtccaccc-tagccacctaattgcagcatttgggtatccttcattgcagcctcctacaccttcaatgtattgggtgtgaag 50070650  T
Q  130 gggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggc 191  Q
    | || || ||||  || |  ||||||||||||||||||||| ||||   |||||||||||||    
T  50070651 gagtagaattaggtccccggtgcctagagatatggcctgtgcagtgcacataaagtttgggc 50070712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 45443177 - 45443299
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | |     
T  45443177 aaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgag 45443276  T
Q  129 ggggtggatttagtcccacattg 151  Q
    |||||||||||||||||||||||    
T  45443277 ggggtggatttagtcccacattg 45443299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 41380621 - 41380741
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccac--tgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| ||||||| || ||||||| | |  | |||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | |     
T  41380621 aaattccgccttaattgcggcccgcccctagtcgccttaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgag 41380720  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  41380721 ggggtggatttagtcccacat 41380741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 54368936 - 54369056
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | |     
T  54368936 aaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgag 54369035  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  54369036 ggggtggatttagtcccacat 54369056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 24860228 - 24860152
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctcc-gtaccttcattgtgttggatgtcaaggggtggatttagtcc 144  Q
    |||||||| ||||| ||||||||||||||||||||   |||||||||||||||| | | | ||||||||||||||||    
T  24860228 attgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcc 24860152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 31606453 - 31606533
Alignment:
Q  154 tagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacc 234  Q
    ||||||||| || |||||||||| | ||||   |||||| ||||||||||||||| ||||||||| ||| |||||||||||    
T  31606453 tagagatatagcatgtgtagtgtttctaaatcatgggcatccctcaccttacaagctggttttgttaggatgagttagacc 31606533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 45016964 - 45016869
Alignment:
Q  105 taccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcac 200  Q
    ||||||||||||||| | ||| || ||||| ||||| | ||||||||| |  ||||||| | |||||||||| ||||||| |||||||||| ||||    
T  45016964 taccttcattgtgttaggtgtaaatgggtgaatttaattccacattgcttttagatatgacttgtgtagtgtttataaagcttgggcagccatcac 45016869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 13769442 - 13769376
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattg 151  Q
    ||||||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||||    
T  13769442 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacattg 13769376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 45941175 - 45941133
Alignment:
Q  194 ccctcaccttacaaggtggttttgtaaggttgagttagaccca 236  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  45941175 ccctcaccttacaagctggttttgtaaggatgagttagaccca 45941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 43101539 - 43101458
Alignment:
Q  69 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    |||||| | ||||| | ||||||||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  43101539 attgcgacctttggttggccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 43101458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 5440680 - 5440720
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  5440680 cctcaccttacaagctggttttgtaaggatgagttagaccc 5440720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 3985712 - 3985790
Alignment:
Q  72 gcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||| ||||| |||||||||| |||||||||   ||||||| |||||||| | | | |||||||||||||||||||||    
T  3985712 gcggcctttggtttgccttcatagcagcctccaacaccttcactgtgttggctttgagggggtggatttagtcccacat 3985790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 50338421 - 50338383
Alignment:
Q  197 tcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  50338421 tcaccttacaagccggttttgtaaggttgagttagaccc 50338383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 4255407 - 4255527
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||| | | ||||| | |||||||||| |||||||   |||||||||||||||| | | |     
T  4255407 aaattccgccttaattgcggtccgcccctagtcgcctaaattgggacctttggttagccttcattgtagcctccaacaccttcattgtgttggctttgag 4255506  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  4255507 ggggtggatttagtcccacat 4255527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 4256131 - 4256251
Alignment:
Q  32 aaattccgccttcattgcggtccacccctagccactga--ttgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaa 128  Q
    |||||||||||| |||||||||| ||||||| | |  |  ||||  | ||||| | ||||||||||||||||||   ||||| |||||||||| | | |     
T  4256131 aaattccgccttaattgcggtccccccctagtcgcctaaattgcaacctttggttagccttcattgcagcctccaacacctttattgtgttggctttgag 4256230  T
Q  129 ggggtggatttagtcccacat 149  Q
    |||||||||||||||||||||    
T  4256231 ggggtggatttagtcccacat 4256251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 13769332 - 13769296
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  13769332 cctcaccttacaagctggttttgtaaggatgagttag 13769296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 25627961 - 25627925
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  25627961 cctcaccttacaagttggttttgtaaggatgagttag 25627925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 35018503 - 35018559
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagacccagcc-caaattctaag 250  Q
    |||||||||||||| ||| |||||||||| ||||||| |||| || |||||||||||    
T  35018503 cctcaccttacaagctgggtttgtaaggtcgagttaggcccaaccacaaattctaag 35018559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 44573279 - 44573343
Alignment:
Q  86 gccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacat 149  Q
    ||||| ||||||||||||   |||||||||||||||| | | | |||||||||||||||||||||    
T  44573279 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 44573343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 47490 - 47396
Alignment:
Q  113 ttgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgggcagccctcaccttacaa 207  Q
    ||||||||| ||| ||| ||||||||||||| |||  ||| | ||||||||||| || ||||||  ||||||||||| |||||||||||||||||    
T  47490 ttgtgttgggtgtgaagtggtggatttagtctcactctgcttggagatatggccagtatagtgttaataaagtttggacagccctcaccttacaa 47396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 143125 - 143186
Alignment:
Q  128 aggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtataaagtttgg 189  Q
    ||||||| |||||| ||||| |||| |||||||||||| |||||||||| ||||||||||||    
T  143125 aggggtgaatttagacccactttgcttagagatatggcatgtgtagtgtttataaagtttgg 143186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 13673 - 13633
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  13673 cctcaccttacaagccggttttgtaaggttgagttagaccc 13633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 20603 - 20639
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  20603 cctcaccttacaagctggttttgtaaggatgagttag 20639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 4280 - 4240
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttagaccc 235  Q
    ||||||||||||||  |||||||||||| ||||||||||||    
T  4280 cctcaccttacaagccggttttgtaaggatgagttagaccc 4240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 21304 - 21268
Alignment:
Q  195 cctcaccttacaaggtggttttgtaaggttgagttag 231  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  21304 cctcaccttacaagttggttttgtaaggatgagttag 21268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University