View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_78 (Length: 318)
Name: NF6131_low_78
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 8168455 - 8168755
Alignment:
| Q |
1 |
ccgacgaggtaaatgacgtggcacaatgactaaagtgaaagttgagaaccgaactgaagaacaaaaacatttttgaatctcaactctcaaatccctaaac |
100 |
Q |
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| T |
8168455 |
ccgacgaggtaaatgacgtggcacaatgactaaagtgaaagttgagaacctaactgaagaacaaaaacatttttgaatctcaactctcaaatccctaaac |
8168554 |
T |
|
| Q |
101 |
ccctaaatctcaaatccttaatagtaattttgaggaattggtttatatgtggccttgcatgtttacttggttctgttgtgtgattgaacaagtttgtcca |
200 |
Q |
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| T |
8168555 |
ccctaaatctcaaatccttaatagtaattttgaggaattggtttatatgtggccttgcatgtttacttggttctgttgtgtgattcaacaagtttgtcca |
8168654 |
T |
|
| Q |
201 |
acaaaccatgttgaattatgtctcatatgatctattttgttttatcatcactcttctaattatgtatgtgtggtatatagaggagttcctttgaagtata |
300 |
Q |
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| T |
8168655 |
acaaaccatgttgaattatgtctc--atgatctattttgttttatcatcactcttctgattatgtatgtgtgttatatagtggagttcctttgaagtata |
8168752 |
T |
|
| Q |
301 |
tat |
303 |
Q |
| |
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||| |
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| T |
8168753 |
tat |
8168755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 37566438 - 37566599
Alignment:
| Q |
132 |
gaggaattggtttatatgtggccttg-catgtttacttggttctgttgtgtgattgaacaagtttgtccaacaaaccatgttgaattatgtctcatatga |
230 |
Q |
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| T |
37566438 |
gaggaattggtttataagtagccttaacatgtttacttggttctgtcatgtaattcaacaagtttgtccaacaagccatgttgaattaggtctcacat-a |
37566536 |
T |
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| Q |
231 |
tctattttgttttatcatcactcttctaattatgtatgtgtggtatatagaggagttcctttga |
294 |
Q |
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| T |
37566537 |
tcta-tttgtttaatcatcacacttctaattgtgtatttgtggtatatagtggagttcctttga |
37566599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 7509341 - 7509309
Alignment:
| Q |
85 |
tctcaaatccctaaacccctaaatctcaaatcc |
117 |
Q |
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| T |
7509341 |
tctcaaatccctaaacccctaaatctcaaatcc |
7509309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 31239856 - 31239820
Alignment:
| Q |
85 |
tctcaaatccctaaacccctaaatctcaaatccttaa |
121 |
Q |
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|||||||||| |||| ||||||||||||||||||||| |
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| T |
31239856 |
tctcaaatccttaaatccctaaatctcaaatccttaa |
31239820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 4087376 - 4087460
Alignment:
| Q |
7 |
aggtaaatgacgtggcacaatgactaaagtgaaagttgagaaccgaactgaagaacaaaaacatttttgaatctcaactctcaaa |
91 |
Q |
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|||||||||| ||| |||| || |||||||||| | || ||||||| ||||| ||||||| | |||||||||||| ||||||| |
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| T |
4087376 |
aggtaaatgatgtgacacatggattaaagtgaaaatagataaccgaattgaaggacaaaaatagctttgaatctcaaatctcaaa |
4087460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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