View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_79 (Length: 318)
Name: NF6131_low_79
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 8358267 - 8358575
Alignment:
| Q |
1 |
ctcaagtttgtgtgaagaatgttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtctagctttttggatgagttgga |
100 |
Q |
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| T |
8358267 |
ctcaagtttgtgtgaagaatgttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtcaagatttttggatgagttgga |
8358366 |
T |
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| Q |
101 |
agaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagagagatcacaacatta-----at |
195 |
Q |
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| T |
8358367 |
agaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagagagatcacaacattaattatat |
8358466 |
T |
|
| Q |
196 |
tatattatattaatttagaaaagaaaatatgagagacatattttaaactcaattatattgcttacgagtaatattatagaggaaataaataattcacggg |
295 |
Q |
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| T |
8358467 |
tatattatattaatttagaaaagaaaatatgagagacatattttaaactcaattatattgcttacaagtaatattatagaggaaataaataattcacgga |
8358566 |
T |
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| Q |
296 |
cgtgatttt |
304 |
Q |
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| T |
8358567 |
cgtgatttt |
8358575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 180
Target Start/End: Complemental strand, 28593301 - 28593124
Alignment:
| Q |
6 |
gtttgtgtgaagaat---gttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtctagctttttggatgagttggaag |
102 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||| ||||||||| |
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| T |
28593301 |
gtttgtgtgaagaataatgttggtagtaaatgtgaaatattgaagagggttatgagtgaatatcgagatcaagagtctagctttttggatcagttggaag |
28593202 |
T |
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| Q |
103 |
aacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagaga |
180 |
Q |
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| T |
28593201 |
agcttgaagaacatgtttacttgtgctttcttaccatcaataaatctaggagacttgttatgcaacaaattacagaga |
28593124 |
T |
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