View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_8 (Length: 691)
Name: NF6131_low_8
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 4 - 674
Target Start/End: Original strand, 25183786 - 25184457
Alignment:
| Q |
4 |
caaaggtgggatgtctctattgactaaaaaactgctcttgttatgtgtgttgagattgctattgttacacaatgttattggatttggaacgcaccatgtg |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25183786 |
caaaggtgggatgtctctattgactaaaaaactgctcttcttatgtgtgttgacattgctattgttacacaatgttattggatttggaacccaccatgtg |
25183885 |
T |
|
| Q |
104 |
attcttactaacgatttggacaataatctggatttaactattctttgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatactt |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25183886 |
attcttactaacgatttggacaataatctggacttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatactt |
25183985 |
T |
|
| Q |
204 |
atggttttaaatttcgagatagaattattggaaacacacaattctactgttcctttcagtggacccgtgagtttcaccattttgatgtatacatacaaag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25183986 |
atggttttaaatttcgagatagaattattggaaacacacaattctactgttcctttcagtggaccggtgagtttcaccattttgatgtatacatacaaag |
25184085 |
T |
|
| Q |
304 |
tgaagattctaaaatatgtggtaatacttgcaattggtctgtaaaaaatactgtaatatgccggactacatcttacgagggttatatttgttttcaatgg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25184086 |
tgaagattctaaaatatgtggtaatacttgcaattggtctgtaaaaaatactgtaatatgccggactacatcttacgagggttatatttgttttcaatgg |
25184185 |
T |
|
| Q |
404 |
cattaagtaattattattaacgtaataaatttgtaatcttaataaatgttgtacgtggagtacttttatgtgtcgatgcttcttaattaaatgtcttatc |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
25184186 |
cattaagtaattattattaacgtaataaatttgtaatcttaataaatgttgtacgtggagtacttatatgtgtcgatgcttcttaattcaatgtcttatc |
25184285 |
T |
|
| Q |
504 |
tagaggtttgtgttttttaagtcttaagtctgtatatccgtttataagaagttgttggaacactaatgaattctagctagtggaaagaataaacacgatg |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25184286 |
tagaggtttgtgttttttaagtcttaagtctgtatatccgtttataagaagttgttggaacaccaatgaattctagctagtggaaagaataaacacgatg |
25184385 |
T |
|
| Q |
604 |
taagaattagtttaggtatgacttaaaatgttttcatgttggagagacatacta-ctaataagtgtttatat |
674 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| |
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| T |
25184386 |
taagaattagtttaggtatgacttaaaatgttttcaagttggagagacatactacctagtaaatgtttatat |
25184457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 464
Target Start/End: Original strand, 25228729 - 25229180
Alignment:
| Q |
6 |
aaggtgggatgtctctattgactaaaaaactgctcttgttatgtgtgttgagattgctattgttacacaatgttattggatttggaacgcaccatgtgat |
105 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
25228729 |
aaggtgtgatgtctctattgactcaaaaactgctcttcttatgtgtgttggcattgctattgatgcacaatgttattggatttggaacgcaccatgtgaa |
25228828 |
T |
|
| Q |
106 |
tcttactaacgatttggacaataatctggatttaactattctttgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatacttat |
205 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25228829 |
tcttattaacaatttggataataatctggatttaactgttcattgcaaatctgcagatgatgatcttggagttcatcttcttcatcatggtgatacttat |
25228928 |
T |
|
| Q |
206 |
ggttttaaatttcgagatagaattattggaaacacacaattctactgttcctttcagtggacccgtgagtttcaccattttgatgtatacatacaaagtg |
305 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||| |
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|
| T |
25228929 |
ggttttacatttcgagataaaattattggcaacacacaattctactgttcatttcagtggaccggtgagtttcactattttgatgtatacatagcaagtg |
25229028 |
T |
|
| Q |
306 |
aagattctaaaatatgtggtaatacttgcaattggtctgtaaaaaatactgtaatatgccggactacatcttacgagggttatatttgttttcaatggca |
405 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||| |||| ||| | ||| || | ||||||| | |||||| || |||||||||| ||| |
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|
| T |
25229029 |
aagattctaaaagatgtg---atacttgcaattggtctataacaaatcctggaccatgtcgcaatacatctcaagagggtaatgtttgttttcattgg-- |
25229123 |
T |
|
| Q |
406 |
ttaagtaattattattaacgtaataaatttgtaatcttaataaatgttgtacgtggagt |
464 |
Q |
| |
|
|| ||| |||||||| |||||||||||| |||||||||||||| |||| |||||| |
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|
| T |
25229124 |
--aataaataattattaatgtaataaatttgcaatcttaataaatgccgtacttggagt |
25229180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 25728615 - 25728565
Alignment:
| Q |
148 |
ttgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25728615 |
ttgcaaatctaaagatgatgatcttggagttcaccttcttcatcatggtga |
25728565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 26545454 - 26545552
Alignment:
| Q |
126 |
ataatctggatttaactattctttgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatacttatggttttaaatttcgagata |
224 |
Q |
| |
|
||||| |||| ||||| ||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||| |
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|
| T |
26545454 |
ataatttggacttaaccgttcattgcaagtctggagatgatgatcttggatctcatcttcttcatcatggtgatagttatggctttaaatttctagata |
26545552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 26550895 - 26550987
Alignment:
| Q |
126 |
ataatctggatttaactattctttgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatacttatggttttaaatttc |
218 |
Q |
| |
|
||||| |||| ||||| ||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
26550895 |
ataatttggacttaaccgttcattgcaagtctgcagatgatgatcttggatctcatcttcttcatcatggtgatagttatggctttaaatttc |
26550987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 25725238 - 25725189
Alignment:
| Q |
148 |
ttgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtg |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25725238 |
ttgcaaatctgcagatgatgatcttggagttcatcttcttcatcatggtg |
25725189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 25733646 - 25733597
Alignment:
| Q |
148 |
ttgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtg |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
25733646 |
ttgcaaatctgcagatgatgatcttggagttcatcttcttcatcatggtg |
25733597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 9591379 - 9591426
Alignment:
| Q |
153 |
aatctaaagatgatgatcttggagttcatcttcttcatcatggtgata |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
9591379 |
aatctaaagatgatgatcttggatctcatattcttcatcatggtgata |
9591426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 38407071 - 38407128
Alignment:
| Q |
152 |
aaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatacttatggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
38407071 |
aaatctaaagatgatgatcttggagttcattttcttcataatggtgatatttatggtt |
38407128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 17373942 - 17373909
Alignment:
| Q |
148 |
ttgcaaatctaaagatgatgatcttggagttcat |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17373942 |
ttgcaaatctaaagatgatgatcttggagttcat |
17373909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 30459776 - 30459728
Alignment:
| Q |
148 |
ttgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggt |
196 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
30459776 |
ttgcaaatccaaagaggatgatcttggagttcaacttctgcatcatggt |
30459728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 596344 - 596312
Alignment:
| Q |
148 |
ttgcaaatctaaagatgatgatcttggagttca |
180 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
596344 |
ttgcaaatccaaagatgatgatcttggagttca |
596312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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