View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_82 (Length: 312)
Name: NF6131_low_82
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_82 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 45284220 - 45284531
Alignment:
| Q |
1 |
actatatacatagatagatatctaattaattcatgatttttatgtcattattgttacacttttatttgtatgccagcgtgactatgaaaaagagattgag |
100 |
Q |
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| T |
45284220 |
actatatacatagatagatatctaattaattcatgatttttatgtcattattgtcacacttttatttgtatgccagcgtgactatgaaaaagagattgag |
45284319 |
T |
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| Q |
101 |
gatttgacaacggaattggccagctacaaggtgcaattagaagcaaagcatgttgcacacatcaaagcacttcttaagccggaacaaaaccaaaagatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45284320 |
gatttgacaacggaattggccagctacaaggtgcaattagaagcaaagcatgttgcacacatcaaagcacttcttaagccagaacaaaaccaaaagatga |
45284419 |
T |
|
| Q |
201 |
ttcaggaattgtctaccttgttgaaaaactctgatattgaaagaaacaagtatgtgaacgaacattcagagggtagagctagtagcaaagacgagcttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284420 |
ttcaggaattgtctaccttgttgaaaaactctgatattgaaagaaacaagtatgtgaacgaacattcagagggtagagctagtagcaaagacgagcttga |
45284519 |
T |
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| Q |
301 |
atcaatgatgaa |
312 |
Q |
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|||||||||||| |
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| T |
45284520 |
atcaatgatgaa |
45284531 |
T |
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