View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_85 (Length: 300)
Name: NF6131_low_85
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 33250754 - 33250492
Alignment:
| Q |
19 |
aattagttcgtaaattaatagatattttttaattaaattgttattttgcatatttgatgattaaatcatgccaccacccatgtcacaaaaacattcttgc |
118 |
Q |
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| T |
33250754 |
aattagttcgtaaattgatagatattttttaattaaattgttattttgcatatttgatgattaaatcatg------------tcacaaaaacattcttgc |
33250667 |
T |
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| Q |
119 |
aggagaaggtttatggtttggaggagttgcaggacatgttcatggaaatggctgaaggattccagagtccttcaatgtattgtgggacaccatcggtggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33250666 |
aggagaaggtttatggtttggaggagttgcaggacatgttcatggaaatggctgaaggattccagagtccttcagtgtattgtgggacaccatcggtggt |
33250567 |
T |
|
| Q |
219 |
tgatgaatcctttgctaacagaggaagtgttttgacacgataattgataatataagccggcccatattttcttcg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
33250566 |
tgatgaatcctttgctaacagaggaagtgttttgacacgataattgataatataagccgggccatatttttttcg |
33250492 |
T |
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