View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_89 (Length: 295)

Name: NF6131_low_89
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_89
NF6131_low_89
[»] chr3 (1 HSPs)
chr3 (11-295)||(26455045-26455329)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 26455329 - 26455045
Alignment:
Q  11 cataggaagttttggagctggatgcctatagaacttttatggtcaaccacaaccctatggcttcccaattcgtgactctcaccaagaagttaaactgaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26455329 cataggaagttttggagctggatgcctatagaacttttatggtcaaccacaaccctatggcttcccaattcgtgactctcaccaagaagttaaactgaag 26455230  T
Q  111 atgcaactgaggaagccattgttccaagtcacaacaaacaaaagtatggaagtgtaattatgggaaatagaacaaggaaggcattgttgaagatacaact 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26455229 atgcaactgaggaagccattgttccaagtcacaacaaacaaaagtatggaagtgtaattatgggaaatagaacaagtaaggcattgttgaagatacaact 26455130  T
Q  211 gaggaagccaactacgtggtgattacaagagaggcaacccattttttaactcctaccttaatgcaagaaaaaatcatcataatat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  26455129 gaggaagccaactacgtggtgattacaagagaggcaacccattttttaacacctacattaatgcaagaaaaaatcatcataatat 26455045  T

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