View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_9 (Length: 679)
Name: NF6131_low_9
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 11 - 661
Target Start/End: Original strand, 10311694 - 10312344
Alignment:
| Q |
11 |
cacagatcctaaacacattgttgaaaagttacatgttaggaataataagaacttgaatgtggctttaggtatcccaacacataattttagacagcatcag |
110 |
Q |
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| T |
10311694 |
cacagatcctaaacacattgttgaaaaattacatgttaggaataataagaacttgaatgtggctttaggtatccctccacataattttagacagcatcag |
10311793 |
T |
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| Q |
111 |
agaaatcatttagctattgagtctaagtataataatagcttgagtagagaaattgcacagaaatcactcagattaagcaaaggacaaaagggaattgatt |
210 |
Q |
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| T |
10311794 |
agaaatcaattagctattgagtctaagtataataatagcttgagtagaaaaattgcacagaaatcactcagattaagcaaaggacaaaagggaattgatt |
10311893 |
T |
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| Q |
211 |
ctagaaagaacttgaatcatgaacaatataaggcttttgctaatataggcaatatggacaatacacattttgttagcagtaaaatccaaagttcttctgc |
310 |
Q |
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| T |
10311894 |
ctagaaagaacttgaatcatgaacaatataaggcttttgctaatataggcaatatggataatacacattttgttagcagtaaaatgcaaagttcttctgc |
10311993 |
T |
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| Q |
311 |
tacatctagttatcctcaattgttaggagagaaaacagtgaagggaaagggaattcttcataatgtgatgtctggcgcagaatgttttaacgatggactc |
410 |
Q |
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| T |
10311994 |
tacatctagttatcctcaattgttaggagagaaaacagtgaagggaaagggaattcttcataatgtgatgtctggcgcagaatgttttaacgatggactc |
10312093 |
T |
|
| Q |
411 |
aacttaagagcgtggatgaagtctgaaagtcataaagtgaagaaatcagaaaggctgtatatatttaaacagattttggaattggttgattttgcacact |
510 |
Q |
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| T |
10312094 |
aacttaagagcgtggatgaagtctgaaagtcataaagtgaagaaatcagaaaggctgtatatatttaaacagattttggaattggttgattttgcacact |
10312193 |
T |
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| Q |
511 |
ctcaaggatttgtcttggaagacataaaaccatcttgtttcgtcttatcgcctttgaataaaattaaatacattggttcatatagccaacatgtgtttga |
610 |
Q |
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| T |
10312194 |
ctcaaggatttgtcttggaagacataaaaccatcttgtttcgtcttatcgcctttgaataaaattaaatacattggttcatatagccaacatgtgtttga |
10312293 |
T |
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| Q |
611 |
tgaccaaaaatcatgtttcaccgtatttaagtcatgccttaaggctatcat |
661 |
Q |
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| T |
10312294 |
tgaccaaaaatcatgtttcaccgtatttaagtcatgccttaaggctatcat |
10312344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 440562 - 440511
Alignment:
| Q |
114 |
aatcatttagctattgagtctaagtataataatagcttgagtagagaaattg |
165 |
Q |
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| T |
440562 |
aatcaattagctattgagtctaaacataataaaagcttgagtagagaaattg |
440511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 440446 - 440376
Alignment:
| Q |
221 |
cttgaatcatgaacaatataaggcttttgctaatataggcaatatggacaatacacattttgttagcagta |
291 |
Q |
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| T |
440446 |
cttgaatcaagaaccacataaagcttttgctaatatcagaaatatagacaatacacatcttgttagcagta |
440376 |
T |
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