View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_90 (Length: 291)
Name: NF6131_low_90
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_90 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 12038843 - 12039107
Alignment:
| Q |
18 |
tctggtacaagagaaaaatccatgtaattttccattgacggctatagagatttttgcagaagaaagaattgctttgatccacttgcaaaactttccatta |
117 |
Q |
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| T |
12038843 |
tctggtacaagagaaaaatccatgtaattttccattgaaggctatagagattttcgcagaagaaagaatagctttgatccacttgcaaaactttccatta |
12038942 |
T |
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| Q |
118 |
aa-ccaaaagcttcaagaacttcaattagaaacttccaatctagagtgtcaaaagcttcagcaatatccaccttcaaagccaagtttcctccaaaagatt |
216 |
Q |
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| T |
12038943 |
aaaccaaaagcttcaagaacttcaatgagaaacttccaatctagagtgtcaaaagctttagcaatatccaccttcaaagcaaggtttcctacaaaagatt |
12039042 |
T |
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| Q |
217 |
ttttgtgtaaaacattgatgacttcagatgttaagcaaatgcaatcctttatgctccttcctttg |
281 |
Q |
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| T |
12039043 |
ttttgtgtaaaacgttgatggctttagatgtcttgcaaatacaatcctttatgctcctttctttg |
12039107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 22164249 - 22164509
Alignment:
| Q |
22 |
gtacaagagaaaaatccatgtaattttccattgacggctatagagatttttgcagaagaaagaattgctttgatccacttgcaaaactttccatt-aaac |
120 |
Q |
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| T |
22164249 |
gtacaggagaaaaaaccatgaagttttccatttatggctattgagatttttgcagaagaaagaatatttttgatccatttgcaaaaaatagaattaaaac |
22164348 |
T |
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| Q |
121 |
caaaagcttcaagaacttcaattagaaacttccaatctagagtgtcaaaagcttcagcaatatccaccttcaaagccaagtttcctccaaaagatttttt |
220 |
Q |
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| T |
22164349 |
caaaagcttcaagaacttcaatgagaaaattccaatcaagagtgtcaaatgcttttgtaattgccaccttcaaagcaagatttcctccaaaagatttttt |
22164448 |
T |
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| Q |
221 |
gtgtaaaacattgatgacttcagatgttaagcaaatgcaatcctttatgctccttcctttg |
281 |
Q |
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| T |
22164449 |
gtgtagaacattgatggcttcagatgtcaaacagatacaatcttttatgctccttcctttg |
22164509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 281
Target Start/End: Original strand, 5152315 - 5152437
Alignment:
| Q |
159 |
agagtgtcaaaagcttcagcaatatccaccttcaaagccaagtttcctccaaaagattttttgtgtaaaacattgatgacttcagatgttaagcaaatgc |
258 |
Q |
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| T |
5152315 |
agagtgtcaaaagctttagcaatatctatcttcatggccaagtttcctccaaaagactttttgttcagaacattgatcgcttcagaggttaggcaaatgc |
5152414 |
T |
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| Q |
259 |
aatcctttatgctccttcctttg |
281 |
Q |
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| T |
5152415 |
agtccttgatgctccttcctttg |
5152437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 281
Target Start/End: Complemental strand, 12302857 - 12302735
Alignment:
| Q |
159 |
agagtgtcaaaagcttcagcaatatccaccttcaaagccaagtttcctccaaaagattttttgtgtaaaacattgatgacttcagatgttaagcaaatgc |
258 |
Q |
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| T |
12302857 |
agagtatcaaaagctttggctatgtccaccttcaaagctaagttgcctccaaaagactttttatgtaaaaggttgattgcttcagaagtaagacaaatac |
12302758 |
T |
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| Q |
259 |
aatcctttatgctccttcctttg |
281 |
Q |
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| T |
12302757 |
agtctttaatgctccttcctttg |
12302735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 281
Target Start/End: Original strand, 37086 - 37209
Alignment:
| Q |
159 |
agagtgtcaaaagcttcagcaatatccaccttcaaagccaagtttcctccaaaaga-ttttttgtgtaaaacattgatgacttcagatgttaagcaaatg |
257 |
Q |
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||||| |||||||||| || || |||||||||||||| ||||| ||||||||||| |||||| ||||||| ||||| ||||||| || | ||||| |
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| T |
37086 |
agagtatcaaaagctttggctatgtccaccttcaaagctaagttgcctccaaaagatttttttatgtaaaaggttgattgcttcagaagtaagacaaata |
37185 |
T |
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| Q |
258 |
caatcctttatgctccttcctttg |
281 |
Q |
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| T |
37186 |
caatctttaaggctccttcctttg |
37209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 18923524 - 18923590
Alignment:
| Q |
147 |
aacttccaatctagagtgtcaaaagcttcagcaatatccaccttcaaagccaagtttcctccaaaag |
213 |
Q |
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| T |
18923524 |
aacttccattctagggtatcaaaagctttagaaatatctaccttgaaagccaagttacctgcaaaag |
18923590 |
T |
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