View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_94 (Length: 283)
Name: NF6131_low_94
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_94 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 4631540 - 4631782
Alignment:
| Q |
20 |
tgaaggaatcaatggtgtatatatat-tattaaatttttcaaaaggtcttgcatctattaatcttacattacatannnnnnnaatctttcaaacagatgg |
118 |
Q |
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| T |
4631540 |
tgaaggaatcaatggtgtatatatatgtattaaatttttcaaaaggtcttgcatctattaatcttag-ttacatatttttttaatctttcaaacagatgg |
4631638 |
T |
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| Q |
119 |
caatacgttgtgtgatatgatttcaattattcaactagcatagtatacctgatttgcacattttcggcgtgtgattatcagtgtttttaataaacaagcg |
218 |
Q |
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| T |
4631639 |
caatacgttgtgtgatatgatttcaattattcaactagcatagtatacctgatttgcacattttcgacgtgtgattatcagtgtttttattaaacaaccg |
4631738 |
T |
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| Q |
219 |
ttagttttaattttataacttataaaatcaaattagaaatcata |
262 |
Q |
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| T |
4631739 |
ttagttttaattttataacttataaaatcaaactagaaatcata |
4631782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 4635785 - 4635894
Alignment:
| Q |
125 |
gttgtgtgatatgatttcaattattcaactagcatagtatacctgatttgcacattttcggcgtgtgattatcagtgtttttaataaacaagcgttagtt |
224 |
Q |
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| T |
4635785 |
gttgtgtgttatgatttcaattattcaactaggatcttatacgtgatttgcacatattcggcgtttgtttacatgtgtttttggtaaacaaacgttagtt |
4635884 |
T |
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| Q |
225 |
ttaattttat |
234 |
Q |
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| T |
4635885 |
ttaattttat |
4635894 |
T |
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