View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_98 (Length: 280)
Name: NF6131_low_98
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_98 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 39278229 - 39278491
Alignment:
| Q |
18 |
gtgactggctcataattgttgtttcttgattgaaatgtgacaaataagaatatatttatgtaaatagtttctgtgttttcttataaaattttatgtttt- |
116 |
Q |
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| T |
39278229 |
gtgactggctcataattgttgtttcttgattgaaatgtgacaaataagaatatatttatgtaaatagtttctgtgttttcttataaaattttatgttttt |
39278328 |
T |
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| Q |
117 |
ttgggacatgtttgatgacaacaggtaatggtgaaatcgttaaagagggtagtaaacctgtgaaagttaatgctgcagagatgaagctgcagacaattga |
216 |
Q |
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| T |
39278329 |
ttgggacatgtttgatgacaacaggtaatagtgaaatcgttaaagagggtagtaaacctgtgaaagttaatgctgcagagatgaagctgcagacaattga |
39278428 |
T |
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| Q |
217 |
gcaacaacgaaatattttgacaatgctagagaaatctttggcaaaagaaagggatcttgagaa |
279 |
Q |
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| T |
39278429 |
gcaacaacgaaatattttgacaatgctagagaaatctttggcaaaagaaagggatcttgagaa |
39278491 |
T |
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