View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_high_1 (Length: 804)
Name: NF6132_high_1
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 5 - 516
Target Start/End: Original strand, 36945421 - 36945922
Alignment:
| Q |
5 |
tgaaccaagtgcagggaccggagagcattgccttcgattctcatgatcgtggcccttacaccggtgttgctgatggaaggattttattttggaacggact |
104 |
Q |
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| T |
36945421 |
tgaaccaagtgcagggaccggagagcattgccttcgattctcatggtcgtggcccttacaccggtgttgctgatggaaggattttgttttggaatggact |
36945520 |
T |
|
| Q |
105 |
gtcttggattgattttgcatacacctcgcccaacaggtcacacttctcttctttccttataacttttccaacttaaatgcttagtacaagataactttgt |
204 |
Q |
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| T |
36945521 |
gtcttggattgattttgcatatacctcacccaacaggtcatgcttctcttctttccttataacttttccaacctaaatgcttagtgcaagataattttgt |
36945620 |
T |
|
| Q |
205 |
gattttgttatctttctgcattactagaatattgccgatagttatcaaattcataagctatagtcatattctagtagttcaagcttattagtat-gaata |
303 |
Q |
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| T |
36945621 |
cattgtgttatctttctgcattactagaatactgtcaatagttatcaaattcataagctgtagtcatactctaatagtgcaagcttattagtatgggata |
36945720 |
T |
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| Q |
304 |
aatgtggctaaaagctactatagtacttagtcatagttctattcctaacttaatgttggaaaactgctacatgcagactttttacctcacaggctaatac |
403 |
Q |
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| T |
36945721 |
aatgtggctaaaagctactatagtac----------ttctattcctaacttaatgttggaaaactgcttcgtgcagactttttacctcataggctcata- |
36945809 |
T |
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| Q |
404 |
tagtggtaaagatctcatgctcttgcaccgatctgtgtaaaagttacagaaaatatgtgtgaaattctgctacattgcatctgaggaagacttttcttaa |
503 |
Q |
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| T |
36945810 |
tactagtaaagatctcatgctcttgcagcgatctgccaaaaaattacagaaaatacatgtgaaagtctgctacattgcatccggggaagatttttcttaa |
36945909 |
T |
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| Q |
504 |
gatgaatggataa |
516 |
Q |
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| T |
36945910 |
gatgaatagataa |
36945922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 487 - 796
Target Start/End: Original strand, 36945922 - 36946236
Alignment:
| Q |
487 |
aggaagacttttcttaagatgaatggataatttgtggcaatgtaactt------cgtgtgataatatttctagcaccttatttctgaacacaggtctgaa |
580 |
Q |
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| T |
36945922 |
aggaagatttttcttaagatcgatagataatttgtagctatgtaactttgcaatcgtgtgataatatttctcgagctttatttctgaacacaggtcagaa |
36946021 |
T |
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| Q |
581 |
ctatgcaatcctaaggcatctgcaacaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggt |
680 |
Q |
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| T |
36946022 |
ctatgcaatctaaaggcatctgcaacaccacttagttatgttgaaactgaggacatctgtggaaggcctttgggactcaga-tttgacaagaaaactggt |
36946120 |
T |
|
| Q |
681 |
gatttatacattgcagatgcatattttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaaggagtaccgttta |
780 |
Q |
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| T |
36946121 |
gatttatacatagcagatgcatatttcgggcttatgaaggtggggcctcaaggtggtttcgcaacatctcttgcaaccgaagcagaaggagtaccattta |
36946220 |
T |
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| Q |
781 |
gatttactgatgatgt |
796 |
Q |
| |
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| T |
36946221 |
gatttactaatgatgt |
36946236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 605 - 769
Target Start/End: Complemental strand, 17768993 - 17768830
Alignment:
| Q |
605 |
acaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggtgatttatacattgcagatgcatat |
704 |
Q |
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| T |
17768993 |
acaccatttagttatgtgaagactgagcacatatgtggaaggcctttgggactcaga-ttcgacaagaaaacaggtgaattgtacattgcagatgcatat |
17768895 |
T |
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| Q |
705 |
tttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaagg |
769 |
Q |
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| T |
17768894 |
cttgggctgttgaaggtggggcccgagggaggtttagcaacatctcttgcaactgaggctgaagg |
17768830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 17769998 - 17769858
Alignment:
| Q |
2 |
ttttgaaccaagtgcagggaccggagagcattgccttcgattctcatgatcgtggcccttacaccggtgttgctgatggaaggattttattttggaacgg |
101 |
Q |
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||||||||||||| || ||||| |||||||||| || || ||| || |||||| ||||| || |||||||||||||| || ||||| || ||||| || |
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| T |
17769998 |
ttttgaaccaagtacaaggacctgagagcattgtgtttgaccctcttggtcgtggtccttatactggtgttgctgatggtagaattttgttctggaatgg |
17769899 |
T |
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| Q |
102 |
actgtcttggattgattttgcatacacctcgcccaacaggt |
142 |
Q |
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| T |
17769898 |
actttcttgggttgactttgcttacacttcgcccaacaggt |
17769858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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