View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_high_11 (Length: 413)
Name: NF6132_high_11
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 113 - 390
Target Start/End: Original strand, 27844037 - 27844315
Alignment:
| Q |
113 |
aagaggaaaataagtcctcactaatttcagtctttagttgatctgtgtctaagtgatagagaccaaatacatttgcatgggtcttagaataagtagtatg |
212 |
Q |
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| T |
27844037 |
aagaggaaaataagtcctcgttaatttcagtctttagttgatctgtatctgagtgatagagaccaaatacatttgcatgggtcttagaataagtggtatg |
27844136 |
T |
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| Q |
213 |
accatagtctttcggtaaataacatgttttattttctttagatatcatttcttacgtgtttttcttatactttgtgctcgtgaatgtccaaaaatcaaga |
312 |
Q |
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| T |
27844137 |
accatagtctttcggtaaataacatgttttattttgtttagatatcatttcctacgtgtttttcttatactttgtgctcgtgaatgtccaaaaatcaaga |
27844236 |
T |
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| Q |
313 |
gatatataactaataaatgtatataatttgttcgtctataaacacaagtc-tttaagcataaaagtatgaatttaatat |
390 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27844237 |
gatatataactaataaatgtatataatttgttagtctataaacacaagtcttttaagcataaaagtatgaatttaatat |
27844315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 113 - 317
Target Start/End: Complemental strand, 27843693 - 27843489
Alignment:
| Q |
113 |
aagaggaaaataagtcctcactaatttcagtctttagttgatctgtgtctaagtgatagagaccaaatacatttgcatgggtcttagaataagtagtatg |
212 |
Q |
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|||||||||||||||| | |||||||||||||||||| ||||||||||| | ||||||||||||||||||||| | | |||||| ||||||| ||||| |
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| T |
27843693 |
aagaggaaaataagtctttgctaatttcagtctttagtcgatctgtgtctgaatgatagagaccaaatacatttccctaggtcttggaataagaggtatg |
27843594 |
T |
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| Q |
213 |
accatagtctttcggtaaataacatgttttattttctttagatatcatttcttacgtgtttttcttatactttgtgctcgtgaatgtccaaaaatcaaga |
312 |
Q |
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| T |
27843593 |
accatagtctttcggtaaataacatgttttattttgtttagatatgatttcctacgtgtttttcttatactttgtgattgtgaatgtccaaaaattaaga |
27843494 |
T |
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| Q |
313 |
gatat |
317 |
Q |
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||||| |
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| T |
27843493 |
gatat |
27843489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 27804028 - 27804111
Alignment:
| Q |
234 |
acatgttttattttctttagatatcatttcttacgtgtttttcttatactttgtgctcgtgaatgtccaaaaatcaagagatat |
317 |
Q |
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| T |
27804028 |
acatgttttattttttttagatgtcatttcctacgtgtttttcttatactttgtgctcttaaatatccaaaaattaagagatat |
27804111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 27843454 - 27843388
Alignment:
| Q |
319 |
taactaataaatgtatataatttgttcgtctataaacacaagtctttaagcataaaagtatgaattt |
385 |
Q |
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|||||||||| | |||| |||||||| ||||||||||| | |||||||||||||||| ||||||||| |
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| T |
27843454 |
taactaataattatatagaatttgttagtctataaacatacgtctttaagcataaaaatatgaattt |
27843388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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