View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_high_12 (Length: 393)
Name: NF6132_high_12
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 2626638 - 2626270
Alignment:
| Q |
9 |
atcataggttcgatatctagctcatgcgtgtgnnnnnnntcacattcaagaaaagaactcatcttgtgttctacatgttctttgacggagattaattatt |
108 |
Q |
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| T |
2626638 |
atcagaggttcgatatctagctcatgcgtgtgaaaaaaatcacattcaagaagaaaactcatcttgtgtcctacatgttctttgatggagattaattatt |
2626539 |
T |
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| Q |
109 |
gttaagcggtgatagaaactacagatcaatgtcatgtttaaaaaataaa--ttgtttatattattaacttacgttcccaaatcactattatattcattca |
206 |
Q |
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|||||||||| ||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2626538 |
gttaagcggtcatagaaactacggatcaacgtcatgtttaaaaaaaaaaaattgtttatattattaacttacg--cccaaatcactattatattcattca |
2626441 |
T |
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| Q |
207 |
tatttgggcttcatagcctttgaaaacataacaatcatttgaaaagttattttctcacctccatgaagggtggtattgtatagaaaggttgtgctataac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626440 |
tatttgggcttcatagcctttgaaaacataacaatcatttgaaaagttcttttctcacctccatgaagggtggtattgtatagaaaggttgtgctataac |
2626341 |
T |
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| Q |
307 |
ttttgttcctttcaaaaacattatcagaagtgtgtgattttctggcagattcttttaattttattaagatt |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626340 |
ttttgttcctttcaaaaacattatcagaagtgtgtgattttctggcagattcttttaattttattaagatt |
2626270 |
T |
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