View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6132_high_17 (Length: 325)
Name: NF6132_high_17
Description: NF6132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6132_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 28593531 - 28593834
Alignment:
| Q |
8 |
tgaaatgaaaccactaataaagcaataagaatagcaccatgtgatgtaacaagagcaattcctccaactttcttgcaaaccctaatcaatgctaatcttc |
107 |
Q |
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| T |
28593531 |
tgaaaagaaaccactaataaagcaataagaatggcaccatgtgatgtaacaagagcaattcctccaactttcttgcaaaccctaatcaatgctaatcttc |
28593630 |
T |
|
| Q |
108 |
tttgaattttctttctctttgatgttagtctatgaagaagttcaatgtacctattgtgaatattatcgaattgcattgtactaataacggacaaagggtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28593631 |
tttgaattttctttctctttgatgttagtctatgaagaagttcaatgtacctattgtgaatattatcgaattgcattgtactaataacggacaaagggtt |
28593730 |
T |
|
| Q |
208 |
gttttgtacttttgatgaaaatgaagcaagctctctatagatatctttctttgtttgttcatttagcacccttttgcttaacttaacaacttgtgtgatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28593731 |
gttttgtacttttgatgaaaatgaagcaagctctctatagatatctttctttgtttgttcatttagcacccttttgcttaacttaacaactcgtgtgatt |
28593830 |
T |
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| Q |
308 |
cttg |
311 |
Q |
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|||| |
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| T |
28593831 |
cttg |
28593834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 8358054 - 8357766
Alignment:
| Q |
8 |
tgaaatgaaaccactaataaagcaataagaatagcaccatgtgatgtaacaagagcaattcctccaactttcttgcaaaccctaatcaatgctaatcttc |
107 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
8358054 |
tgaaaagaaaccactaataaagcaataagaatagcagcatgtgatgtaacaagagcaattcctccaactttcttgcaaacactaatcaatgttaatcttc |
8357955 |
T |
|
| Q |
108 |
tttgaattttctttctctttgatgttagtctatgaagaagttcaatgtacctattgtgaatattatcgaattgcattgtactaataacggacaaagggtt |
207 |
Q |
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||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||| |||| | || ||||||||||||||||||||| |||||||| || |
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| T |
8357954 |
tttgaattttccttctctttgatgttagtttttgaagaagttccatgtacctattgcgaatgtcatggaattgcattgtactaataacagacaaaggatt |
8357855 |
T |
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| Q |
208 |
gttttgtacttttgatgaaaatgaagcaagctctctatagatatctttctttgtttgttcatttagcacccttttgcttaacttaacaa |
296 |
Q |
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|||||||| |||||||| |||| ||||||| |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
8357854 |
gttttgtaattttgatggaaataaagcaagttctctatagatatctttctttgttggttcattaatcacccttttgcttaacttaacaa |
8357766 |
T |
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